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ミスマッチ/ギャップを許容 ミスマッチのみ許容 ： 塩基まで (検索する配列長の25%まで)
双方向を検索 ＋方向のみ検索 －方向のみ検索

2025-03-25 20:04:31, GGGenome : DDBJ release 134.0 (Mar, 2024)

Summary:

Results:

検索語に色がつきます（ミスマッチ・挿入欠失）。

Wolffia australiana isolate 7733 chromosome 6.
CP092605.1:10260060-10260079
AGCTGGCGGATGAAGCTGGAGAAGTTGTTG10260060TGCTTGAAATAGGTGGGGAGAAGCACTCTAGCGAACTCGGGAGAATTCCA
Malus hybrid cultivar cultivar Flame chromosome 4.
CP141913.1:1508269-1508288
AGCTGACGAATGAAGCTGGAGAAGTTGTTG1508269TGCTTGAAATAGGTGGGGAGCAGAACCCGGGAGAACTCGGGCGGGTTCCA
Malus hybrid cultivar cultivar Flame chromosome 4.
CP141930.1:1657456-1657475
AGCTGACGAATGAAGCTGGAGAAGTTGTTG1657456TGCTTGAAATAGGTGGGGAGCAGAACCCGGGAGAACTCGGGCGGGTTCCA
Malus hybrid cultivar cultivar Royalty chromosome 4.
CP141956.1:1590671-1590690
AGCTGACGAATGAAGCTGGAGAAGTTGTTG1590671TGCTTGAAATAGGTGGGGAGCAGAACCCGGGAGAACTCGGGCGGGTTCCA
Malus hybrid cultivar cultivar Royalty chromosome 4.
CP141973.1:1787783-1787802
AGCTGACGAATGAAGCTGGAGAAGTTGTTG1787783TGCTTGAAATAGGTGGGGAGCAGAACCCGGGAGAACTCGGGCGGGTTCCA
Malus hybrid cultivar cultivar Royalty chromosome 13.
CP141982.1:3628274-3628293
AGCTGACGAATGAAGCTGGAGAAGTTGTTG3628274TGCTTGAAATAGGTGGGGAGCAGAACCCGAGCAAACTCGGGCGGGTTCCA
Malus hybrid cultivar cultivar SH6 chromosome 4.
CP143361.1:1579179-1579198
AGCTGACGAATGAAGCTGGAGAAGTTGTTG1579179TGCTTGAAATAGGTGGGGAGCAGAACCCGGGAGAACTCGGGCGGGTTCCA
Malus hybrid cultivar cultivar SH6 chromosome 4.
CP143378.1:1454101-1454120
AGCTGACGAATGAAGCTGGAGAAGTTGTTG1454101TGCTTGAAATAGGTGGGGAGCAGAACCCGGGAGAACTCGGGCGGGTTCCA
Malus hybrid cultivar cultivar SH6 chromosome 13.
CP143387.1:34172036-34172055
AGCTGACGAATGAAGCTGGAGAAGTTGTTG34172036TGCTTGAAATAGGTGGGGAGCAGAACCCGAGCAAACTCGGGCGGGTTCCA
Malus sylvestris genome assembly, chromosome: 4.
OU696506.1:1645568-1645587
AGCTGACGAATGAAGCTGGAGAAGTTGTTG1645568TGCTTGAAATAGGTGGGGAGCAGAACCCGGGAGAACTCGGGCGGGTTCCA
Malus domestica genome assembly, chromosome: 4.
OU696680.1:1569488-1569507
AGCTGACGAATGAAGCTGGAGAAGTTGTTG1569488TGCTTGAAATAGGTGGGGAGCAGAACCCGGGAGAACTCGGGCGGGTTCCA
Malus domestica genome assembly, chromosome: 4.
OU744545.1:1598622-1598641
AGCTGACGAATGAAGCTGGAGAAGTTGTTG1598622TGCTTGAAATAGGTGGGGAGCAGAACCCGGGAGAACTCGGGCGGGTTCCA
Malus domestica genome assembly, chromosome: 4.
OU744956.1:1554603-1554622
AGCTGACGAATGAAGCTGGAGAAGTTGTTG1554603TGCTTGAAATAGGTGGGGAGCAGAACCCGGGAGAACTCGGGCGGGTTCCA
Malus domestica genome assembly, chromosome: 4.
OU744994.1:1466633-1466652
AGCTGACGAATGAAGCTGGAGAAGTTGTTG1466633TGCTTGAAATAGGTGGGGAGCAGAACCCGGGAGAACTCGGGCGGGTTCCA
Crataegus laevigata genome assembly, chromosome: 7.
OY756944.1:1993306-1993325
AGCTGACGAATGAAGCTGGAGAAGTTGTTG1993306TGCTTGAAATAGGTGGGGAGCAGAACCCGGGCGAACTCGGGCGGGTTCCA
Pyrus communis genome assembly, chromosome: 6.
OY757073.1:5677157-5677176
AGCTGACGAATGAAGCTGGAGAAGTTGTTG5677157TGCTTGAAATAGGTGGGGAGCAGAACCCGAGCAAACTCGGGCGGATTCCA
Pyrus communis genome assembly, chromosome: 17.
OY757084.1:1214998-1215017
AGCTGACGAATGAAGCTGGAGAAGTTGTTG1214998TGCTTGAAATAGGTGGGGAGCAGAACCCGGGCGAACTCGGGCGGGTTCCA
Cornus suecica genome assembly, chromosome: 4.
OY998241.1:15431462-15431481
AGCTGTCTGATGAAGCTGGAGAAGTTGTTG15431462TGCTTGAAATAGGTGGGGAGAAGAAGGCGCGCGAACTCGGGAGGGTTCCA
Sequence 313 from patent US 6833446.
AR617421.1:265-284
TGGAACCCGCCCGAGTTCGCCCGCCTCCTG265CTCCCCACCTATTTCAAGCACAACAACTTCTCCAGCTTCATCCGGCAGCT
JP 2003525024-A/313: Compositions and methods for the modification of plant gene transcription.
BD376678.1:265-284
TGGAACCCGCCCGAGTTCGCCCGCCTCCTG265CTCCCCACCTATTTCAAGCACAACAACTTCTCCAGCTTCATCCGGCAGCT
JP 2010512141-A/258: TRANSCRIPTION FACTORS.
FW351876.1:265-284
TGGAACCCGCCCGAGTTCGCCCGCCTCCTG265CTCCCCACCTATTTCAAGCACAACAACTTCTCCAGCTTCATCCGGCAGCT
Sequence 266 from patent US 7507875.
GP284207.1:265-284
TGGAACCCGCCCGAGTTCGCCCGCCTCCTG265CTCCCCACCTATTTCAAGCACAACAACTTCTCCAGCTTCATCCGGCAGCT
Sequence 266 from patent US 8110723.
GZ147233.1:265-284
TGGAACCCGCCCGAGTTCGCCCGCCTCCTG265CTCCCCACCTATTTCAAGCACAACAACTTCTCCAGCTTCATCCGGCAGCT
Sequence 313 from Patent EP2133426.
HC204566.1:265-284
TGGAACCCGCCCGAGTTCGCCCGCCTCCTG265CTCCCCACCTATTTCAAGCACAACAACTTCTCCAGCTTCATCCGGCAGCT
Sequence 266 from Patent EP1639089.
HH970528.1:265-284
TGGAACCCGCCCGAGTTCGCCCGCCTCCTG265CTCCCCACCTATTTCAAGCACAACAACTTCTCCAGCTTCATCCGGCAGCT
Sequence 266 from patent US 8962947.
HK479117.1:265-284
TGGAACCCGCCCGAGTTCGCCCGCCTCCTG265CTCCCCACCTATTTCAAGCACAACAACTTCTCCAGCTTCATCCGGCAGCT
JP 2011087577-A/258: TRANSCRIPTION FACTORS.
HV336164.1:265-284
TGGAACCCGCCCGAGTTCGCCCGCCTCCTG265CTCCCCACCTATTTCAAGCACAACAACTTCTCCAGCTTCATCCGGCAGCT
JP 2011229530-A/258: TRANSCRIPTION FACTORS.
HV544902.1:265-284
TGGAACCCGCCCGAGTTCGCCCGCCTCCTG265CTCCCCACCTATTTCAAGCACAACAACTTCTCCAGCTTCATCCGGCAGCT
JP 2013531971-A/313: Compositions and Methods for the Modification of Gene Transcription.
HW326858.1:265-284
TGGAACCCGCCCGAGTTCGCCCGCCTCCTG265CTCCCCACCTATTTCAAGCACAACAACTTCTCCAGCTTCATCCGGCAGCT
Sequence 313 from Patent EP2563802.
JB245395.1:265-284
TGGAACCCGCCCGAGTTCGCCCGCCTCCTG265CTCCCCACCTATTTCAAGCACAACAACTTCTCCAGCTTCATCCGGCAGCT
Vigna angularis mRNA, clone: VES06M24.
HX944651.1:215-234
TGGAATCCGCCGGAGTTCGCTCGCCTTCTT215CTCCCCACCTATTTCAAGCACAACAACTTTTCCAGCTTCATCCGCCAGCT
TSA: Pyrus x bretschneideri Unigene32748_XinShao mRNA sequence.
JR625514.1:278-297
TGGAACCCGCCCGAGTTCGCCCGGGTTCTG278CTCCCCACCTATTTCAAGCACAACAACTTCTCCAGCTTCATTCGTCAACT
Vigna angularis var. angularis DNA, chromosome 5, almost complete sequence, cultivar: Shumari.
AP015038.1:33620655-33620674
TGGAATCCGCCGGAGTTCGCTCGCCTTCTT33620655CTCCCCACCTATTTCAAGCACAACAACTTTTCCAGCTTCATCCGCCAGCT
Malus hybrid cultivar cultivar Flame chromosome 13.
CP141922.1:37537519-37537538
TGGAACCCGCCCGAGTTTGCTCGGGTTCTG37537519CTCCCCACCTATTTCAAGCACAACAACTTCTCCAGCTTCATTCGTCAGCT
Malus hybrid cultivar cultivar Flame chromosome 13.
CP141939.1:40247145-40247164
TGGAACCCGCCCGAGTTTGCTCGGGTTCTG40247145CTCCCCACCTATTTCAAGCACAACAACTTCTCCAGCTTCATTCGTCAGCT
Malus hybrid cultivar cultivar Royalty chromosome 13.
CP141965.1:2405006-2405025
TGGAACCCGCCCGAGTTTGCTCGGGTTCTG2405006CTCCCCACCTATTTCAAGCACAACAACTTCTCCAGCTTCATTCGTCAGCT
Malus hybrid cultivar cultivar SH6 chromosome 13.
CP143370.1:39292429-39292448
TGGAACCCGCCCGAGTTTGCTCGGGTTCTG39292429CTCCCCACCTATTTCAAGCACAACAACTTCTCCAGCTTCATTCGTCAGCT
Eriobotrya japonica heat shock factor 2 (HSF2) mRNA, complete cds.
KR132193.1:354-373
TGGAACCCGCCCGAGTTTGCTCGGGTTCTG354CTCCCCACCTATTTCAAGCACAACAACTTCTCCAGCTTCATTCGTCAGCT
Malus sylvestris genome assembly, chromosome: 13.
OU696515.1:38802743-38802762
TGGAACCCGCCCGAGTTTGCTCGGGTTCTG38802743CTCCCCACCTATTTCAAGCACAACAACTTCTCCAGCTTCATTCGTCAGCT
Malus domestica genome assembly, chromosome: 13.
OU696689.1:39123215-39123234
TGGAACCCGCCCGAGTTTGCTCGGGTTCTG39123215CTCCCCACCTATTTCAAGCACAACAACTTCTCCAGCTTCATTCGTCAGCT
Malus domestica genome assembly, chromosome: 13.
OU744554.1:38966586-38966605
TGGAACCCGCCCGAGTTTGCTCGGGTTCTG38966586CTCCCCACCTATTTCAAGCACAACAACTTCTCCAGCTTCATTCGTCAGCT
Malus domestica genome assembly, chromosome: 13.
OU744965.1:37887221-37887240
TGGAACCCGCCCGAGTTTGCTCGGGTTCTG37887221CTCCCCACCTATTTCAAGCACAACAACTTCTCCAGCTTCATTCGTCAGCT
Geum urbanum genome assembly, chromosome: 9.
OX327005.1:38837000-38837019
TGGAACCCTCCCGAGTTCGCTCGCCTTCTA38837000CTCCCCACCTATTTCAAGCACAACAACTTCTCCTCCTTCATCCGTCAGCT
Comarum palustre genome assembly, chromosome: 6.
OX637577.1:12961001-12961020
TGGAATCCTCCAGAATTCGCTAGGCTTCTC12961001CTCCCCACCTATTTCAAGCACAACAACTTCTCTAGCTTCATCCGTCAGCT
Malus x robusta genome assembly, chromosome: 17.
OY720341.1:24175314-24175333
TGGAACCCGCCCGAGTTCTCCCGGGTTCTG24175314CTCCCCACCTATTTCAAGCACAACAACTTCTCCAGCTTCATTCGTCAGCT
Crataegus laevigata genome assembly, chromosome: 3.
OY756940.1:35364465-35364484
TGGAACCCGCCCGAGTTTGCTCGGGTTCTG35364465CTCCCCACCTATTTCAAGCACAACAACTTCTCCAGCTTCATTCGTCAGCT
Potentilla sterilis genome assembly, chromosome: 8.
OY821761.1:33317013-33317032
TGGAACCCTCCGGAATTCTCTAGGCTTCTC33317013CTCCCCACCTATTTCAAGCACAACAACTTCTCTAGCTTCATCCGTCAGCT
Chlorobaculum limnaeum strain DSM 1677 chromosome, complete genome.
CP017305.1:2449273-2449292
GTCGGCAGGATTCTGGTCAGCTTCATTCTG2449273CTCCCCACCTATTTCAAGCAGGGCGTTACCTCGATCTACGAGGTGATCGG

Data Export:

下記のフォーマットで最大100000件まで検索結果を取得できます。

Debug Info:

Redirect URI : https://gggenome.dbcls.jp/ja/ddbj/TGCTTGAAATAGGTGGGGAG
lang : ja | db : ddbj | k : 0 | strand : | nogap : | query_string : TGCTTGAAATAGGTGGGGAG | format : html | download : | debug : 

0.009 | 0.009 | search_start;
0.431 | 0.422 | search_plus_done; http://172.18.8.135:50400/match?q=TGCTTGAAATAGGTGGGGAG&k=0&no_gap=0&offset=0&limit=50
0.979 | 0.548 | search_minus_done; http://172.18.8.135:50400/match?q=CTCCCCACCTATTTCAAGCA&k=0&no_gap=0&offset=0&limit=32
0.998 | 0.019 | cgi_end;

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