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Database:
 

Max number of mismatches/gaps mismatches : (no more than 25% of the query length)
Search for: both strand plus strand minus strand

2025-04-05 11:57:32, GGGenome : DDBJ release 134.0 (Mar, 2024)

Summary:

Results:

Matches are highlighted with blue background. Mismatches and indels are marked in red.

Malus hybrid cultivar cultivar Flame chromosome 4.
CP141913.1:28687304-28687324
TTTAATCCAACATTTTGTATGAATGATATT28687304TGGAAAAAGTCACACTGCTCCAGAACTCTCTCTCCCTCTCTCTCTACCCCC
Malus hybrid cultivar cultivar Flame chromosome 4.
CP141930.1:30056362-30056382
TTTAATCCAACATTTTGTATGAATGATATT30056362TGGAAAAAGTCACACTGCTCCAGTACTCTCTCTCTCTCTCTCTCTCTCTCT
Malus hybrid cultivar cultivar Royalty chromosome 4.
CP141956.1:28603331-28603351
TTTAATCCAACATTTTGTATGAATGATATT28603331TGGAAAAAGTCACACTGCTCCAGAACTCTCTCTCCCTCTCTCTCTACCCCC
Malus hybrid cultivar cultivar Royalty chromosome 4.
CP141973.1:28309084-28309104
TTTAATCCAACATTTTGTATGAATGATATT28309084TGGAAAAAGTCACACTGCTCCAGAACTATCTCTCGGCGAGCACAGTTGGAA
Malus hybrid cultivar cultivar SH6 chromosome 4.
CP143361.1:29625840-29625860
TTTAATCCAACATTTTGTATGAATGATATT29625840TGGAAAAAGTCACACTGCTCCAGTACTCTCTCTCTCTCTCTCTCTCTCTCT
Malus sylvestris genome assembly, chromosome: 4.
OU696506.1:29859558-29859578
TTTAATCCAACATTTTGTATGAATGATATT29859558TGGAAAAAGTCACACTGCTCCAGAACTATCTCTCGGCGAGCACAGTTGGAA
Malus domestica genome assembly, chromosome: 4.
OU696680.1:29852150-29852170
TTTAATCCAACATTTTGTATGAATGATATT29852150TGGAAAAAGTCACACTGCTCCAGAACTATCTCTCGGCGAGCACAGTTGGAA
Malus domestica genome assembly, chromosome: 4.
OU744545.1:29811039-29811059
TTTAATCCAACATTTTGTATGAATGATATT29811039TGGAAAAAGTCACACTGCTCCAGAACTATCTCTCGGCGAGCACAGTTGGAA
Malus domestica genome assembly, chromosome: 4.
OU744956.1:30093325-30093345
TTTAATCCAACATTTTGTATGAATGATATT30093325TGGAAAAAGTCACACTGCTCCAGAACTCTCTCTCTCTCTCTCTCTCTACCC
Malus domestica genome assembly, chromosome: 4.
OU744994.1:30004833-30004853
TTTAATCCAACATTTTGTATGAATGATATT30004833TGGAAAAAGTCACACTGCTCCAGAACTCTCTCTCTCTCTCTCTACCCCCGA
Pyrus communis genome assembly, chromosome: 17.
OY757084.1:20840960-20840980
CTCTGGTTTTAATCCAACATTTTGTATATT20840960TGGAAAAAGTCACACTGCTCCACAACTCTCTCTCTCTCTCTCTCTCTCTCT
Malus x robusta genome assembly, chromosome: 17.
OY720341.1:1373476-1373496
GGGGGTAGAGAGAGAGGGAGAGAGAGTTCT1373476GGAGCAGTGTGACTTTTTCCAAATATCATTCATACAAAATGTTGGATTAAA
Salticus scenicus genome assembly, chromosome: 4.
OZ005651.1:142760388-142760408
ACAAACTTAATCACTTTTTTTCCTTCAACA142760388GGAGCAGTGTGACTTTTTCCACTGTTTATATTTCCGTTTCCTGACCAGTTT

Data Export:

Maximum 100000 results can be retrieved in various formats shown below:

Debug Info:

Redirect URI : https://gggenome.dbcls.jp/en/ddbj/TGGAAAAAGTCACACTGCTCC
lang : en | db : ddbj | k : 0 | strand : | nogap : | query_string : TGGAAAAAGTCACACTGCTCC | format : html | download : | debug : 

0.009 | 0.009 | search_start;
0.113 | 0.104 | search_plus_done; http://172.18.8.135:50400/match?q=TGGAAAAAGTCACACTGCTCC&k=0&no_gap=0&offset=0&limit=50
0.145 | 0.032 | search_minus_done; http://172.18.8.135:50400/match?q=GGAGCAGTGTGACTTTTTCCA&k=0&no_gap=0&offset=0&limit=39
0.147 | 0.001 | cgi_end;

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