GGGenome Help | Japanese

Database:
 

Max number of mismatches/gaps mismatches : (no more than 25% of the query length)
Search for: both strand plus strand minus strand

2025-04-04 18:56:14, GGGenome : DDBJ release 134.0 (Mar, 2024)

Summary:

Results:

Matches are highlighted with blue background. Mismatches and indels are marked in red.

TSA: Pisum sativum Ps_contig_mira-ass_19731 mRNA sequence.
JI916127.1:262-284
ARAAAAGAACCATATATACATAAATATTTA262TGGAAGGTTTTCACCCATCTATGAATATGAGCATGAGCATGAACATGAACCCT
TSA: Pisum sativum Ps_contig_mira-ass_20697 mRNA sequence.
JI917079.1:359-381
AAAAAAGAACCATATATACATAAATATTTA359TGGAAGGTTTTCACCCATCTATGAATATGAGCATGAGCATGAGCATGAACATG
Pisum sativum stamina pistilloidia (Stp) mRNA, complete cds.
AF004843.1:359-381
AAAAAAGAACCATATATACATAAATATTTA359TGGAAGGTTTTCACCCATCTATGAATATGAGCATGAGCATGAGCATGAACATG
Lotus japonicus B-129 DNA, chromosome 4, complete sequence.
AP022632.1:2414460-2414482
TTCTCAAACCATATAAAACATATTTCCATA2414460TGGAAGGTTTTCACCCATCTATGACTATGGCCTCTCCTTTTCCTTACACATTC
Lotus japonicus proliferating floral organs protein (Pfo) gene, complete cds.
AY156687.1:2-24
A2TGGAAGGTTTTCACCCATCTATGACTATGGCCTCTCCTTTTCCTTACACATTC
Pisum sativum Stp-h1 pseudogene, complete sequence.
AY274930.1:261-283
AAAAAAGAACCATATATACATAAATATTTA261TGGAAGGTTTTCACCCATCTATGAATATGAGCATGAGCATGAGCATGAACATG
Pisum sativum Stp-h2 gene, complete cds.
AY274931.1:262-284
AGAAAAGAACCATATATACATAAATATTTA262TGGAAGGTTTTCACCCATCTATGAATATGAGCATGAGCATGAACATGAACCCT
Pisum sativum Stp-h3 gene, complete cds.
AY274932.1:262-284
AAAAAAGAACCATATATACATAAATATTTA262TGGAAGGTTTTCACCCATCTATGAATATGAGCATGAGCATGAACATGAACCCT
Pisum sativum Stp-h4 gene, complete cds.
AY274933.1:260-282
AAAAAAGAACCATATATACATAAATATTTA260TGGAAGGTTTTCACCCATCTATGAATATGAGCATGAGCATGAGCATGAACATG
Lotus corniculatus var. japonicus UFO-like protein mRNA, complete cds.
AY770394.1:638-660
TTCTCAAACCATATAAAACATATTTCCATA638TGGAAGGTTTTCACCCATCTATGACTATGGCCTCTCCTTTTCCTTACACATTC
Medicago truncatula Stamina pistilloidia (Stp) mRNA, partial cds.
AY932821.1:2-24
A2TGGAAGGTTTTCACCCATCTATGAATATGAGTATGAATATGAATATGAGCATG
Astragalus glycyphyllos genome assembly, chromosome: 4.
OY754310.1:75553021-75553043
CTAACCCTACCTAGTATCTTAACATAAATA75553021TGGAAGGTTTTCACCCATCTATGACCCCTTCTTTCTCTTACACATTCCCTATC
Lathyrus aphaca genome assembly, chromosome: 3.
OZ014521.1:92252919-92252941
CTTTAAGGCCAAACCCTAGCTATATACTTA92252919TGGAAGGTTTTCACCCATCTATGAATATGAGCATGAGCATGAGCATGAACATG
C0250 Pisum sativum shoot apical meristem ESTs Pisum sativum cDNA clone C0250, mRNA sequence.
EX568912.1:221-243
CATGTTCATGCTCATGCTCATGCTCATATT221CATAGATGGGTGAAAACCTTCCATAAATATTTATGTATATATGGTTCTTTTTT
MBEEF25TR mth2 Medicago truncatula genomic clone 37E2, genomic survey sequence.
CG926226.1:696-718
CATGCTCATATTCATATTCATACTCATATT696CATAGATGGGTGAAAACCTTCCATAAATATAAATATAAATTTGTATATGGTTC
Medicago truncatula clone mth2-75g11, WORKING DRAFT SEQUENCE.
AC235671.5:37814-37836
CATGCTCATATTCATATTCATACTCATATT37814CATAGATGGGTGAAAACCTTCCATAAATATAAATATAAATTTGTATATGGTTC
Vuralia turcica stamina pistilloidia 2 (StP2) gene, complete cds.
MN539742.1:1773-1795
CATATTCATATTCATATTCATACTCATATT1773CATAGATGGGTGAAAACCTTCCATAAATATAAATATAAATGTTTATATGGTTG
Medicago arabica genome assembly, chromosome: 1.
OX326964.1:58088907-58088929
CATATTCATATTCATATTCATACTCATATT58088907CATAGATGGGTGAAAACCTTCCATAAATATAAATATAAGTGTTTATATGGTTC
Lathyrus sativus genome assembly, chromosome: 7.
OZ012741.1:613725989-613726011
AGGGTTCATGTTCATGTTCATGCTCATATT613725989CATAGATGGGTGAAAACCTTCCATAAATATGTAGCTAGGGTTTGGCTTTAAAG

Data Export:

Maximum 100000 results can be retrieved in various formats shown below:

Debug Info:

Redirect URI : https://gggenome.dbcls.jp/en/ddbj/TGGAAGGTTTTCACCCATCTATG
lang : en | db : ddbj | k : 0 | strand : | nogap : | query_string : TGGAAGGTTTTCACCCATCTATG | format : html | download : | debug : 

0.009 | 0.009 | search_start;
0.384 | 0.375 | search_plus_done; http://172.18.8.135:50400/match?q=TGGAAGGTTTTCACCCATCTATG&k=0&no_gap=0&offset=0&limit=50
0.583 | 0.200 | search_minus_done; http://172.18.8.135:50400/match?q=CATAGATGGGTGAAAACCTTCCA&k=0&no_gap=0&offset=0&limit=37
0.587 | 0.004 | cgi_end;

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