GGGenome Help | Japanese

Database:
 

Max number of mismatches/gaps mismatches : (no more than 25% of the query length)
Search for: both strand plus strand minus strand

2025-03-15 19:12:27, GGGenome : DDBJ release 134.0 (Mar, 2024)

Summary:

Results:

Matches are highlighted with blue background. Mismatches and indels are marked in red.

Trifolium repens isolate ACLI19 chromosome 04_Occ.
CP125842.1:215376-215395
ACTTCCGATCGACAAACACAGGTCCGGCGG215376TGGAAGTATGTTCCCGAAGGCTTTGATGCATAAAGCCGCCACCGCAAACA
Trifolium repens isolate ACLI19 chromosome 04_Pall.
CP125843.1:262195-262214
ACTTCCGATCGACAAACACAGATCCGGCGG262195TGGAAGTATGTTCCCGAAGGCTTTGATGCACAAAGCCACTGCGGCAAATA
Lactuca saligna genome assembly, chromosome: 8.
OX465084.1:176780387-176780406
ACATCCCTATGATGCAGTCCTAGTATGGAA176780387TGGAAGTATGTTCCCGAAGGTTTGACCTACATCCCTATGATGCAGTCCTA
Trifolium repens mRNA, clone: WCC15g10_059, unspecified EST.
FY459338.1:315-334
TATTTGCGGCGGCGGCTTTATGCATCAAAG315CCTTCGGGAACATACTTCCACCGCCGGACCTGTGTTTGTCGATCGGAAGT
Trifolium repens mRNA, clone: WCC21l10_062, unspecified EST.
FY461556.1:329-348
TATTTGCCGCAGTGGCTTTGTGCATCAAAG329CCTTCGGGAACATACTTCCACCGCCGGATCTGTGTTTGTCGATCGGAAGT
Trifolium repens mRNA, clone: WCC43f04_052, unspecified EST.
FY469286.1:314-333
TATTTGCCGCAGTGGCTTTGTGCATCAAAG314CCTTCGGGAACATACTTCCACCGCCGGATCTGTGTTTGTCGATCGGAAGT

Data Export:

Maximum 100000 results can be retrieved in various formats shown below:

Debug Info:

Redirect URI : https://gggenome.dbcls.jp/en/ddbj/TGGAAGTATGTTCCCGAAGG
lang : en | db : ddbj | k : 0 | strand : | nogap : | query_string : TGGAAGTATGTTCCCGAAGG | format : html | download : | debug : 

0.009 | 0.009 | search_start;
0.106 | 0.097 | search_plus_done; http://172.18.8.135:50400/match?q=TGGAAGTATGTTCCCGAAGG&k=0&no_gap=0&offset=0&limit=50
0.384 | 0.278 | search_minus_done; http://172.18.8.135:50400/match?q=CCTTCGGGAACATACTTCCA&k=0&no_gap=0&offset=0&limit=47
0.386 | 0.002 | cgi_end;

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