GGGenome Help | Japanese

Database:
 

Max number of mismatches/gaps mismatches : (no more than 25% of the query length)
Search for: both strand plus strand minus strand

2025-03-14 21:22:11, GGGenome : DDBJ release 134.0 (Mar, 2024)

Summary:

Results:

Matches are highlighted with blue background. Mismatches and indels are marked in red.

Glycine max cDNA clone: GMFL01-20-H03, 3'end.
BW662540.1:228-247
CGGAATTGTTCGTGCAAGAGCTACCAGCAC228TGGAATCAGAAACAGCATCGTGATTGTTACTATTAGTATTATTGAAAGAT
Gm_ck33074 Soybean induced by Salicylic Acid Glycine max cDNA 3', mRNA sequence.
CD407678.1:192-211
TGGAATTGTTCGTGCAAGAGCTACCAGCAC192TGGAATCAGAAACAGCATCGGGATTGTTATTATTATTATTATTATTATTA
CCCC19486.g1 CCCC Glycine max callus grown in dark condition Glycine max cDNA clone CCCC19486 3', mRNA sequence.
GR854181.1:228-247
CGGAATTGTTCGTGCAAGAGCTACCAGCAC228TGGAATCAGAAACAGCATCGTGATTGTTACTATTAGTATTATTGAAAGAT
Glycine max cultivar Williams 82 chromosome 13.
CP126438.1:34845101-34845120
TGGAATTGTTCGTGCAAGAGCTACCAGCAC34845101TGGAATCAGAAACAGCATCGGGATTGTTATTATTATTATTATTATTATTA
Sequence 997 from patent US 7345217.
EA483399.1:501-520
ATCTTTCAATAATACTAATAGTAACAATCA501CGATGCTGTTTCTGATTCCAGTGCTGGTAGCTCTTGCACGAACAATTCCG
Sequence 998 from patent US 7345217.
EA483400.1:547-566
TAATAATAATAATAATAATAATAACAATCC547CGATGCTGTTTCTGATTCCAGTGCTGGTAGCTCTTGCACGAACAATTCCA
Sequence 6763 from Patent WO2008034648.
FB787490.1:518-537
TAATAATAATAATAATAATAATAACAATCC518CGATGCTGTTTCTGATTCCAGTGCTGGTAGCTCTTGCACGAACAATTCCA
Sequence 6781 from Patent WO2008034648.
FB787508.1:517-536
ATCTTTCAATAATACTAATAGTAACAATCA517CGATGCTGTTTCTGATTCCAGTGCTGGTAGCTCTTGCACGAACAATTCCG
Sequence 13166 from Patent WO2008034648.
FB793893.1:518-537
TAATAATAATAATAATAATAATAACAATCC518CGATGCTGTTTCTGATTCCAGTGCTGGTAGCTCTTGCACGAACAATTCCA
Sequence 13184 from Patent WO2008034648.
FB793911.1:517-536
ATCTTTCAATAATACTAATAGTAACAATCA517CGATGCTGTTTCTGATTCCAGTGCTGGTAGCTCTTGCACGAACAATTCCG
Sequence 27749 from Patent WO2008034648.
FB808476.1:518-537
TAATAATAATAATAATAATAATAACAATCC518CGATGCTGTTTCTGATTCCAGTGCTGGTAGCTCTTGCACGAACAATTCCA
Sequence 27767 from Patent WO2008034648.
FB808494.1:517-536
ATCTTTCAATAATACTAATAGTAACAATCA517CGATGCTGTTTCTGATTCCAGTGCTGGTAGCTCTTGCACGAACAATTCCG
Sequence 33706 from Patent WO2008034648.
FB814433.1:518-537
TAATAATAATAATAATAATAATAACAATCC518CGATGCTGTTTCTGATTCCAGTGCTGGTAGCTCTTGCACGAACAATTCCA
Sequence 34969 from Patent WO2008034648.
FB815696.1:518-537
TAATAATAATAATAATAATAATAACAATCC518CGATGCTGTTTCTGATTCCAGTGCTGGTAGCTCTTGCACGAACAATTCCA
Sequence 34987 from Patent WO2008034648.
FB815714.1:517-536
ATCTTTCAATAATACTAATAGTAACAATCA517CGATGCTGTTTCTGATTCCAGTGCTGGTAGCTCTTGCACGAACAATTCCG
Sequence 38309 from Patent WO2008034648.
FB819036.1:518-537
TAATAATAATAATAATAATAATAACAATCC518CGATGCTGTTTCTGATTCCAGTGCTGGTAGCTCTTGCACGAACAATTCCA
Sequence 38327 from Patent WO2008034648.
FB819054.1:517-536
ATCTTTCAATAATACTAATAGTAACAATCA517CGATGCTGTTTCTGATTCCAGTGCTGGTAGCTCTTGCACGAACAATTCCG
Sequence 41329 from Patent WO2008034648.
FB822056.1:518-537
TAATAATAATAATAATAATAATAACAATCC518CGATGCTGTTTCTGATTCCAGTGCTGGTAGCTCTTGCACGAACAATTCCA
Sequence 44394 from Patent WO2008034648.
FB825121.1:518-537
TAATAATAATAATAATAATAATAACAATCC518CGATGCTGTTTCTGATTCCAGTGCTGGTAGCTCTTGCACGAACAATTCCA
Sequence 53195 from Patent WO2008034648.
FB833922.1:518-537
TAATAATAATAATAATAATAATAACAATCC518CGATGCTGTTTCTGATTCCAGTGCTGGTAGCTCTTGCACGAACAATTCCA
Sequence 54991 from Patent WO2008034648.
FB835718.1:518-537
TAATAATAATAATAATAATAATAACAATCC518CGATGCTGTTTCTGATTCCAGTGCTGGTAGCTCTTGCACGAACAATTCCA
Sequence 55009 from Patent WO2008034648.
FB835736.1:517-536
ATCTTTCAATAATACTAATAGTAACAATCA517CGATGCTGTTTCTGATTCCAGTGCTGGTAGCTCTTGCACGAACAATTCCG
Sequence 62994 from Patent WO2008034648.
FB843721.1:518-537
TAATAATAATAATAATAATAATAACAATCC518CGATGCTGTTTCTGATTCCAGTGCTGGTAGCTCTTGCACGAACAATTCCA
Sequence 63012 from Patent WO2008034648.
FB843739.1:517-536
ATCTTTCAATAATACTAATAGTAACAATCA517CGATGCTGTTTCTGATTCCAGTGCTGGTAGCTCTTGCACGAACAATTCCG
Sequence 75270 from Patent WO2008034648.
FB855997.1:518-537
TAATAATAATAATAATAATAATAACAATCC518CGATGCTGTTTCTGATTCCAGTGCTGGTAGCTCTTGCACGAACAATTCCA
Sequence 75288 from Patent WO2008034648.
FB856015.1:517-536
ATCTTTCAATAATACTAATAGTAACAATCA517CGATGCTGTTTCTGATTCCAGTGCTGGTAGCTCTTGCACGAACAATTCCG
Sequence 83363 from Patent WO2008034648.
FB864090.1:518-537
TAATAATAATAATAATAATAATAACAATCC518CGATGCTGTTTCTGATTCCAGTGCTGGTAGCTCTTGCACGAACAATTCCA
Sequence 83381 from Patent WO2008034648.
FB864108.1:517-536
ATCTTTCAATAATACTAATAGTAACAATCA517CGATGCTGTTTCTGATTCCAGTGCTGGTAGCTCTTGCACGAACAATTCCG
Sequence 96311 from Patent WO2008034648.
FB877038.1:518-537
TAATAATAATAATAATAATAATAACAATCC518CGATGCTGTTTCTGATTCCAGTGCTGGTAGCTCTTGCACGAACAATTCCA
Sequence 96329 from Patent WO2008034648.
FB877056.1:517-536
ATCTTTCAATAATACTAATAGTAACAATCA517CGATGCTGTTTCTGATTCCAGTGCTGGTAGCTCTTGCACGAACAATTCCG
Sequence 98827 from Patent WO2008034648.
FB879554.1:518-537
TAATAATAATAATAATAATAATAACAATCC518CGATGCTGTTTCTGATTCCAGTGCTGGTAGCTCTTGCACGAACAATTCCA
Sequence 102630 from Patent WO2008034648.
FB883357.1:518-537
TAATAATAATAATAATAATAATAACAATCC518CGATGCTGTTTCTGATTCCAGTGCTGGTAGCTCTTGCACGAACAATTCCA
Sequence 102648 from Patent WO2008034648.
FB883375.1:517-536
ATCTTTCAATAATACTAATAGTAACAATCA517CGATGCTGTTTCTGATTCCAGTGCTGGTAGCTCTTGCACGAACAATTCCG
Sequence 149621 from Patent WO2008034648.
FB930348.1:518-537
TAATAATAATAATAATAATAATAACAATCC518CGATGCTGTTTCTGATTCCAGTGCTGGTAGCTCTTGCACGAACAATTCCA
Sequence 149639 from Patent WO2008034648.
FB930366.1:517-536
ATCTTTCAATAATACTAATAGTAACAATCA517CGATGCTGTTTCTGATTCCAGTGCTGGTAGCTCTTGCACGAACAATTCCG
Sequence 496 from patent US 7511190.
GP291297.1:501-520
ATCTTTCAATAATACTAATAGTAACAATCA501CGATGCTGTTTCTGATTCCAGTGCTGGTAGCTCTTGCACGAACAATTCCG
Sequence 497 from patent US 7511190.
GP291298.1:547-566
TAATAATAATAATAATAATAATAACAATCC547CGATGCTGTTTCTGATTCCAGTGCTGGTAGCTCTTGCACGAACAATTCCA
Sequence 33923 from patent US 7569389.
GP684548.1:475-494
ATCTTTCAATAATACTAATAGTAACAATCA475CGATGCTGTTTCTGATTCCAGTGCTGGTAGCTCTTGCACGAACAATTCCG
Sequence 496 from patent US 7659446.
GV640388.1:501-520
ATCTTTCAATAATACTAATAGTAACAATCA501CGATGCTGTTTCTGATTCCAGTGCTGGTAGCTCTTGCACGAACAATTCCG
Sequence 497 from patent US 7659446.
GV640389.1:547-566
TAATAATAATAATAATAATAATAACAATCC547CGATGCTGTTTCTGATTCCAGTGCTGGTAGCTCTTGCACGAACAATTCCA
Sequence 496 from patent US 8110725.
GZ149830.1:501-520
ATCTTTCAATAATACTAATAGTAACAATCA501CGATGCTGTTTCTGATTCCAGTGCTGGTAGCTCTTGCACGAACAATTCCG
Sequence 497 from patent US 8110725.
GZ149831.1:547-566
TAATAATAATAATAATAATAATAACAATCC547CGATGCTGTTTCTGATTCCAGTGCTGGTAGCTCTTGCACGAACAATTCCA
Sequence 496 from patent US 8426678.
GZ834038.1:501-520
ATCTTTCAATAATACTAATAGTAACAATCA501CGATGCTGTTTCTGATTCCAGTGCTGGTAGCTCTTGCACGAACAATTCCG
Sequence 497 from patent US 8426678.
GZ834039.1:547-566
TAATAATAATAATAATAATAATAACAATCC547CGATGCTGTTTCTGATTCCAGTGCTGGTAGCTCTTGCACGAACAATTCCA
Sequence 6763 from Patent EP2090662.
HB657549.1:518-537
TAATAATAATAATAATAATAATAACAATCC518CGATGCTGTTTCTGATTCCAGTGCTGGTAGCTCTTGCACGAACAATTCCA
Sequence 6781 from Patent EP2090662.
HB657567.1:517-536
ATCTTTCAATAATACTAATAGTAACAATCA517CGATGCTGTTTCTGATTCCAGTGCTGGTAGCTCTTGCACGAACAATTCCG
Sequence 13166 from Patent EP2090662.
HB663952.1:518-537
TAATAATAATAATAATAATAATAACAATCC518CGATGCTGTTTCTGATTCCAGTGCTGGTAGCTCTTGCACGAACAATTCCA
Sequence 13184 from Patent EP2090662.
HB663970.1:517-536
ATCTTTCAATAATACTAATAGTAACAATCA517CGATGCTGTTTCTGATTCCAGTGCTGGTAGCTCTTGCACGAACAATTCCG
Sequence 27749 from Patent EP2090662.
HB678535.1:518-537
TAATAATAATAATAATAATAATAACAATCC518CGATGCTGTTTCTGATTCCAGTGCTGGTAGCTCTTGCACGAACAATTCCA
Sequence 27767 from Patent EP2090662.
HB678553.1:517-536
ATCTTTCAATAATACTAATAGTAACAATCA517CGATGCTGTTTCTGATTCCAGTGCTGGTAGCTCTTGCACGAACAATTCCG
saf48c11.y3 Gm-c1077 Glycine max cDNA clone GENOME SYSTEMS CLONE ID: Gm-c1077-1677 5', mRNA sequence.
BI321171.1:111-130
TAATAATAATAATAATAATAATAACAATCC111CGATGCTGTTTCTGATTCCAGTGCTGGTAGCTCTTGCACGAACAATTCCA
Glycine max cDNA, clone: GMFL02-33-O21, 5'end.
DB967262.1:433-452
ATCTTTCAATAATACTAATAGTAACAATCA433CGATGCTGTTTCTGATTCCAGTGCTGGTAGCTCTTGCACGAACAATTCCG
CCCC19486.b1 CCCC Glycine max callus grown in dark condition Glycine max cDNA clone CCCC19486 5', mRNA sequence.
GR854180.1:448-467
ATCTTTCAATAATACTAATAGTAACAATCA448CGATGCTGTTTCTGATTCCAGTGCTGGTAGCTCTTGCACGAACAATTCCG
ocpsga0_0410_G10.ab1 Soybean immature seed full-length-enriched cDNA library Glycine max cDNA, mRNA sequence.
HO040046.1:496-515
ATCTTTCAATAATACTAATAGTAACAATCA496CGATGCTGTTTCTGATTCCAGTGCTGGTAGCTCTTGCACGAACAATTCCG
Glycine max cDNA, clone: GMFL01-20-H03.
AK245078.1:554-573
ATCTTTCAATAATACTAATAGTAACAATCA554CGATGCTGTTTCTGATTCCAGTGCTGGTAGCTCTTGCACGAACAATTCCG
Glycine max cultivar Williams 82 chromosome 15.
CP126440.1:6090799-6090818
ATCTTTCAATAATACTAATAGTAACAATCA6090799CGATGCTGTTTCTGATTCCAGTGCTGGTAGCTCTTGCACGAACAATTCCG
Agapetus fuscipes genome assembly, chromosome: 20.
OX637352.1:8592855-8592874
TGATGATAATATTTCACTTACGTCCTATCT8592855CGATGCTGTTTCTGATTCCACCCTGGTTCATCAAGGAGGCAGCAGCATAT
Elophila nymphaeata genome assembly, chromosome: 7.
OY039073.1:22816567-22816586
CGGCGGGCGGCGTCAAACTACCTATGCAAA22816567CGATGCTGTTTCTGATTCCAACAATAACTTTGAGAAGTCTGTGCGAACAA

Data Export:

Maximum 100000 results can be retrieved in various formats shown below:

Debug Info:

Redirect URI : https://gggenome.dbcls.jp/en/ddbj/TGGAATCAGAAACAGCATCG
lang : en | db : ddbj | k : 0 | strand : | nogap : | query_string : TGGAATCAGAAACAGCATCG | format : html | download : | debug : 

0.009 | 0.009 | search_start;
0.209 | 0.200 | search_plus_done; http://172.18.8.135:50400/match?q=TGGAATCAGAAACAGCATCG&k=0&no_gap=0&offset=0&limit=50
0.937 | 0.729 | search_minus_done; http://172.18.8.135:50400/match?q=CGATGCTGTTTCTGATTCCA&k=0&no_gap=0&offset=0&limit=46
0.973 | 0.035 | cgi_end;

GGGenome by @meso_cacase at DBCLS
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