GGGenome Help | English

データベース：
 

ミスマッチ/ギャップを許容 ミスマッチのみ許容 ： 塩基まで (検索する配列長の25%まで)
双方向を検索 ＋方向のみ検索 －方向のみ検索

2025-04-03 15:02:02, GGGenome : DDBJ release 134.0 (Mar, 2024)

Summary:

Results:

検索語に色がつきます（ミスマッチ・挿入欠失）。

Gallus gallus breed Huxu chromosome 12.
CP100566.1:16963259-16963278
GAGATGTGAGGACACAGGGCACCAGACAAA16963259TGGAATCCCATCTTCCAGAGAAGCTAAGAATTGAAATTATCCATGAATTT
Meleagris gallopavo genome assembly, chromosome: 14.
OW982264.1:16397836-16397855
GAGATGCGAGGACACAGGGCACCAGACAAA16397836TGGAATCCCATCTTCCAGAGAAGCTAAGAATTGAAATCATCCATGAATTT
Meleagris gallopavo genome assembly, chromosome: 14.
OW982303.1:16216064-16216083
GAGATGCGAGGACACAGGGCACCAGACAAA16216064TGGAATCCCATCTTCCAGAGAAGCTAAGAATTGAAATCATCCATGAATTT
MAG: Xinjiang mamastrovirus 5 isolate 227-2671, complete genome.
MW784081.1:5135-5154
GATTACTCCAGGCAATACTGGTATTGGCAG5135TGGAATCCCATCTTCCAGAGCCATAATGGCAAACCCTACCATGTCTCCAA
Musa troglodytarum cultivar karat chromosome 9.
CP097511.1:8169562-8169581
TGCTCCACATCACCCATCTATGAGCCAAAA8169562TGGAATCCCATCTTCCAGAGACAGAGAAGGTAGAAGAATTCAAGAATTAG
MAG: Desulfobacterales bacterium isolate bin36 chromosome.
CP070746.1:1976607-1976626
GGGGTCAAAAAGGGTAATCAAAATCACCGC1976607CTCTGGAAGATGGGATTCCAGTTCATCTTGATTCGTACATATAATTATTT
Embrapa_Musa_ABB_Stressed_Cachaco_DZ10TF Embrapa_Musa_Cachaco_ABB_Stressed Musa ABB Group cDNA, mRNA sequence.
FL662829.1:489-508
CTAATTCTTGAATTCTTCCCCCTTCTCTGT489CTCTGGAAGATGGGATTCCATTTTGGCTCAGAGATGGGTGTTGTGGAGCA
TSA: Musa acuminata AAA Group Unigene83085_B1 mRNA sequence.
JV351359.1:380-399
CTAATTCTTGAATTCTTCCCCCTTCTCTGT380CTCTGGAAGATGGGATTCCATTTTGGCTCAGAGATGGGTGATGTGGAGCA
TSA: Musa acuminata AAA Group Unigene88030_NK1 mRNA sequence.
JV448749.1:283-302
CTAATTCTTGAATTCTTCCCCCTTCTCTGT283CTCTGGAAGATGGGATTCCATTTTGGCTCAGAGATGGGTGATGTGGAGCA
Musa acuminata subsp. malaccensis isolate AA chromosome 10.
CP126379.1:34460284-34460303
CTAATTCTTGAATTCTTCCCCCTTCTCTGT34460284CTCTGGAAGATGGGATTCCATTTTGGCTCAGAGATGGGTGATGTGGAGCA
Musa acuminata subsp. malaccensis isolate AA chromosome 21.
CP126390.1:38181177-38181196
CTAATTCTTGAATTCTTCCCCCTTCTCTGT38181177CTCTGGAAGATGGGATTCCATTTTGGCTCAGAGATGGGTGATGTGGAGCA
Musa acuminata subsp. malaccensis strain Doubled-haploid Pahang (DH-Pahang) genome assembly, chromosome: A10.
HG996476.1:31714511-31714530
CTAATTCTTGAATTCTTCCACCTTCTCTGT31714511CTCTGGAAGATGGGATTCCATTTTGGCTCAGAGATGGGTGATGTGGAGCA
Musa schizocarpa genome assembly, chromosome: S10.
LS990924.1:35478197-35478216
CTAATTCTTGAATTCTTCCCCCTTCTCTGT35478197CTCTGGAAGATGGGATTCCATTTTGGCTCAGAGATGGGTGATGTGGAGCA

Data Export:

下記のフォーマットで最大100000件まで検索結果を取得できます。

Debug Info:

Redirect URI : https://gggenome.dbcls.jp/ja/ddbj/TGGAATCCCATCTTCCAGAG
lang : ja | db : ddbj | k : 0 | strand : | nogap : | query_string : TGGAATCCCATCTTCCAGAG | format : html | download : | debug : 

0.010 | 0.010 | search_start;
0.204 | 0.194 | search_plus_done; http://172.18.8.135:50400/match?q=TGGAATCCCATCTTCCAGAG&k=0&no_gap=0&offset=0&limit=50
0.493 | 0.290 | search_minus_done; http://172.18.8.135:50400/match?q=CTCTGGAAGATGGGATTCCA&k=0&no_gap=0&offset=0&limit=45
0.502 | 0.009 | cgi_end;

GGGenome by @meso_cacase at DBCLS
This page is licensed under a Creative Commons Attribution 4.0 International License (CC BY 4.0).