GGGenome Help | English

データベース：
 

ミスマッチ/ギャップを許容 ミスマッチのみ許容 ： 塩基まで (検索する配列長の25%まで)
双方向を検索 ＋方向のみ検索 －方向のみ検索

2025-03-25 06:36:23, GGGenome : DDBJ release 134.0 (Mar, 2024)

Summary:

Results:

検索語に色がつきます（ミスマッチ・挿入欠失）。

Microcaecilia unicolor genome assembly, chromosome: 11.
LR594642.1:186723057-186723076
TCTTGAAAGGGAAAAGCTATCACTATTGGC186723057TGGACTTTGCTGCTGCTAGAGAAAGGCTTTGACCTTCCAGGATTATCTTT
Pv015C_M13R_A02.ab1 Phaseolus vulgaris cv Early gallatin Phaseolus vulgaris cDNA, mRNA sequence.
FE692710.1:644-663
TTCGCTTCTACCACCCAAGATGTTCAAATA644TGGACTTTGCTGCTGCTAGAAGAAGAGGAGAGTTTTAATGTTAATCGTGA
UCRVU04_CCNI9510_b1 Cowpea 524B Mixed Tissue and Conditions cDNA Library UCRVU04-1-2 Vigna unguiculata cDNA clone CCNI9510.b1, mRNA sequence.
FG826836.1:306-325
TTCACTTCTACCACCCAAGATGTTCAAAGA306TGGACTTTGCTGCTGCTAGAAGAGGAGAGTTTAAATTTTAATCGTGACCA
UCRVU04_CCNI16379_b1 Cowpea 524B Mixed Tissue and Conditions cDNA Library UCRVU04-1-2 Vigna unguiculata cDNA clone CCNI16379.b1, mRNA sequence.
FG834198.1:45-64
TTCACTTCTACCACCCAAGATGTTCAAAGA45TGGACTTTGCTGCTGCTAGAAGAGGAGAGTTTAAATTTTAATCGTGACCA
Vigna unguiculata subsp. unguiculata cultivar IT97K-499-35 clone BAC H007E04, *** SEQUENCING IN PROGRESS ***, 23 unordered pieces.
AC273872.1:169598-169617
TTCACTTCTACCACCCAAGATGTTCAAAGA169598TGGACTTTGCTGCTGCTAGAAGAGGAGAGTTTAAATTTTAATCGTGACCA
Vigna unguiculata subsp. unguiculata cultivar IT97K-499-35 clone BAC H074C18, *** SEQUENCING IN PROGRESS ***, 19 unordered pieces.
AC274099.1:142683-142702
TTCACTTCTACCACCCAAGATGTTCAAAGA142683TGGACTTTGCTGCTGCTAGAAGAGGAGAGTTTAAATTTTAATCGTGACCA
Vigna angularis var. angularis DNA, chromosome 2, almost complete sequence, cultivar: Shumari.
AP015035.1:25352698-25352717
TTCACTTCTACCACCCAAGATGTTCAAAGA25352698TGGACTTTGCTGCTGCTAGAAGAGGAGAGTTTTAAATTTTAATCGTGAGC
Ctenicera cuprea genome assembly, chromosome: 6.
OY284491.1:8206170-8206189
TCACGGCTGCACGATACAACTTCAGGACTT8206170TGGACTTTGCTGCTGCTAGAGCAGCTCTGTTTATCATATTTTTATATCAA
Mouse DNA sequence from clone RP23-360O1 on chromosome 4.
AL627127.20:12563-12582
AGAAAGGCACTAAAGCCACTCATGGGGTGC12563TCTAGCAGCAGCAAAGTCCAGCCTGACTCAGGGCACGGTCAGGTTTCAAT
Mus musculus genome assembly, chromosome: 4.
OW971568.1:147212112-147212131
AGAAAGGCACTAAAGCCACTCATGGGGTGC147212112TCTAGCAGCAGCAAAGTCCAGCCTGACTCAGGGCACGGTCAGGTTTCAAT
Mus musculus genome assembly, chromosome: 4.
OW971577.1:147040951-147040970
AGAAAGGCACTAAAGCCACTCATGGGGTGC147040951TCTAGCAGCAGCAAAGTCCAGCCTGACTCAGGGCACGGTCAGGTTTCAAT
Mus musculus genome assembly, chromosome: 4.
OW971597.1:147002817-147002836
AGAAAGGCACTAAAGCCACTCATGGGGTGC147002817TCTAGCAGCAGCAAAGTCCAGCCTGACTCAGGGCACGGTCAGGTTTCAAT
Mus musculus genome assembly, chromosome: 4.
OW971639.1:145076471-145076490
AGAAAGGCACTAAAGCCACTCATGGGGTGC145076471TCTAGCAGCAGCAAAGTCCAGCCTGACTCAGGGCACGGTCAGGTTTCAAT
Mus musculus genome assembly, chromosome: 4.
OW971712.1:145494735-145494754
AGAAAGGCACTAAAGCCACTCATGGGGTGC145494735TCTAGCAGCAGCAAAGTCCAGCCTGACTCAGGGCACGGTCAGGTTTCAAT
Mus musculus genome assembly, chromosome: 4.
OW971723.1:145761370-145761389
AGAAAGGCACTAAAGCCACTCATGGGGTGC145761370TCTAGCAGCAGCAAAGTCCAGCCTGACTCAGGGCACGGTCAGGTTTCAAT
Mus musculus genome assembly, chromosome: 4.
OW971745.1:147416222-147416241
AGAAAGGCACTAAAGCCACTCATGGGGTGC147416222TCTAGCAGCAGCAAAGTCCAGCCTGACTCAGGGCACGGTCAGGTTTCAAT
Mus musculus genome assembly, chromosome: 4.
OW971786.1:146698371-146698390
AGAAAGGCACTAAAGCCACTCATGGGGTGC146698371TCTAGCAGCAGCAAAGTCCAGCCTGACTCAGGGCACGGTCAGGTTTCAAT
Mus musculus genome assembly, chromosome: 4.
OW971808.1:150598584-150598603
AGAAAGGCACTAAAGCCACTCATGGGGTGC150598584TCTAGCAGCAGCAAAGTCCAGCCTGACTCAGGGCACGGTCAGGTTTCAAT
Mus musculus castaneus genome assembly, chromosome: 4.
OW971838.1:151083223-151083242
AGAAAGGCACTAAAGCCACTCATGGGGTGC151083223TCTAGCAGCAGCAAAGTCCAGCCTGACTCAGGGCACGGTCAGGTTTCAAT
Mus musculus genome assembly, chromosome: 4.
OW971856.1:148382658-148382677
AGAAAGGCACTAAAGCCACTCATGGGGTGC148382658TCTAGCAGCAGCAAAGTCCAGCCTGACTCAGGGCACGGTCAGGTTTCAAT
Mus musculus genome assembly, chromosome: 4.
OX390147.1:157322957-157322976
AGAAAGGCACTAAAGCCACTCATGGGGTGC157322957TCTAGCAGCAGCAAAGTCCAGCCTGACTCAGGGCACGGTCAGGTTTCAAT
Mus musculus genome assembly, chromosome: 4.
OX439018.1:163832114-163832133
AGAAAGGCACTAAAGCCACTCATGGGGTGC163832114TCTAGCAGCAGCAAAGTCCAGCCTGACTCAGGGCACGGTCAGGTTTCAAT
04ANAA3_T7_065_G04_26FEB2006_020 04ANAA3 Phaseolus angustissimus cDNA, mRNA sequence.
FD785808.1:112-131
TCACGATTAACATTAAAACTCTCCTCTTCT112TCTAGCAGCAGCAAAGTCCATATTTGAACATCTGGGTGGTAGAAGCGAAT
UCRVU04_CCNI2016_g1 Cowpea 524B Mixed Tissue and Conditions cDNA Library UCRVU04-1-2 Vigna unguiculata cDNA clone CCNI2016.g1, mRNA sequence.
FG813792.1:138-157
TGGTCACGATTAAAATTTAAACTCTCCTCT138TCTAGCAGCAGCAAAGTCCATCTTTGAACATCTTGGGTGGTAGAAGTGAA
UCRVU04_CCNI4358_g1 Cowpea 524B Mixed Tissue and Conditions cDNA Library UCRVU04-1-2 Vigna unguiculata cDNA clone CCNI4358.g1, mRNA sequence.
FG817805.1:186-205
TGGTCACGATTAAAATTTAAACTCTCCTCT186TCTAGCAGCAGCAAAGTCCATCTTTGAACATCTTGGGTGGTAGAAGTGAA
UCRVU05_CCNN3807_g1 Cowpea IT84S-2049 Mixed Tissue and Conditions cDNA Library UCRVU05-2-2 Vigna unguiculata cDNA clone CCNN3807.g1, mRNA sequence.
FG840141.1:171-190
TGGTCACGATTAAAATTTAAACTCTCCTCT171TCTAGCAGCAGCAAAGTCCATCTTTGAACATCTTGGGTGGTAGAAGTGAA
UCRVU05_CCNN16989_g1 Cowpea IT84S-2049 Mixed Tissue and Conditions cDNA Library UCRVU05-2-2 Vigna unguiculata cDNA clone CCNN16989.g1, mRNA sequence.
FG850639.1:132-151
TGGTCACGATTAAAATTTAAACTCTCCTCT132TCTAGCAGCAGCAAAGTCCATTTTTGAACATTTTGGGGGGTAAAAGTGAA
Vigna angularis mRNA, clone: VES09J11.
HX945704.1:269-288
GCTCACGATTAAAATTTAAAACTCTCCTCT269TCTAGCAGCAGCAAAGTCCATCTTTGAACATCTTGGGTGGTAGAAGTGAA
Vigna angularis mRNA, clone: VES12_B18.
HX946653.1:246-265
GCTCACGATTAAAATTTAAAACTCTCCTCT246TCTAGCAGCAGCAAAGTCCATCTTTGAACATCTTGGGTGGTAGAAGTGAA
PV_GBa0093M20.f PV_GBa Phaseolus vulgaris genomic clone PV_GBa0093M20 5', genomic survey sequence.
EI481242.1:218-237
TCACGATTAACATTAAAACTCTCCTCTTCT218TCTAGCAGCAGCAAAGTCCATATTTGAACATCTTGGGTGGTAGAAGCGAA
Vigna unguiculata cultivar Xiabao 2 chromosome Vu09.
CP039355.1:30472427-30472446
TGGTCACGATTAAAATTTAAACTCTCCTCT30472427TCTAGCAGCAGCAAAGTCCATCTTTGAACATCTTGGGTGGTAGAAGTGAA
Avena insularis genome assembly, chromosome: 1D.
OU342345.1:369627028-369627047
ACACAATTATATGTCAATTGGACTAACTTG369627028TCTAGCAGCAGCAAAGTCCACACAAGCATCACAACCCACCAGGAATCCAA

Data Export:

下記のフォーマットで最大100000件まで検索結果を取得できます。

Debug Info:

Redirect URI : https://gggenome.dbcls.jp/ja/ddbj/TGGACTTTGCTGCTGCTAGA
lang : ja | db : ddbj | k : 0 | strand : | nogap : | query_string : TGGACTTTGCTGCTGCTAGA | format : html | download : | debug : 

0.009 | 0.009 | search_start;
0.813 | 0.804 | search_plus_done; http://172.18.8.135:50400/match?q=TGGACTTTGCTGCTGCTAGA&k=0&no_gap=0&offset=0&limit=50
1.672 | 0.859 | search_minus_done; http://172.18.8.135:50400/match?q=TCTAGCAGCAGCAAAGTCCA&k=0&no_gap=0&offset=0&limit=42
1.688 | 0.016 | cgi_end;

GGGenome by @meso_cacase at DBCLS
This page is licensed under a Creative Commons Attribution 4.0 International License (CC BY 4.0).