GGGenome | Results

2025-04-09 19:02:50, GGGenome : DDBJ release 134.0 (Mar, 2024)

Summary:

Results:

検索語に色がつきます（ミスマッチ・挿入欠失）。

TSA: Brassica rapa x Raphanus sativus RNA, contig: BB3_22370.
FX733211.1:1621-1640

AGCGCGCGTAGTCGTTGCGTTGCCGCCATA1621TGGAGATTGTCCTCCGATCACCGACTAAAAAGTTAGATCTTTGGTTTCAT

KBrB033O04F KBrB, Brassica rapa BamHI BAC library Brassica rapa subsp. pekinensis genomic clone KBrB033O04, genomic survey sequence.
DX035679.1:216-235

AGCGCGCGTAGTCGTTGCGTTGCCGCCATA216TGGAGATTGTCCTCCGATCACCGACTAAAAAGTTAGATCTTTGGTTTCAT

KBrB054M21R KBrB, Brassica rapa BamHI BAC library Brassica rapa subsp. pekinensis genomic clone KBrB054M21, genomic survey sequence.
DX051510.1:330-349

AGCGCGCGTAGTCGTTGCGTTGCCGCCATA330TGGAGATTGTCCTCCGATCACCGACTAAAAAGTTAGATCTTTGGTTTCAT

KBrB070H12R KBrB, Brassica rapa BamHI BAC library Brassica rapa subsp. pekinensis genomic clone KBrB070H12, genomic survey sequence.
DX063328.1:330-349

AGCGCGCGTAGTCGTTGCGTTGCCGCCATA330TGGAGATTGTCCTCCGATCACCGACTAAAAAGTTAGATCTTTGGTTTCAT

KBrB126A13F KBrB, Brassica rapa BamHI BAC library Brassica rapa subsp. pekinensis genomic clone KBrB126A13, genomic survey sequence.
ED533956.1:347-366

AGCGCGCGTAGTCGTTGCGTTGCCGCCATA347TGGAGATTGTCCTCCGATCACCGACTAAAAAGTTAGATCTTTGGTTTCAT

KBrB128H13R KBrB, Brassica rapa BamHI BAC library Brassica rapa subsp. pekinensis genomic clone KBrB128H13, genomic survey sequence.
ED535786.1:315-334

AGCGCGCGTAGTCGTTGCGTTGCCGCCATA315TGGAGATTGTCCTCCGATCACCGACTAAAAAGTTAGATCTTTGGTTTCAT

Brassica rapa subsp. pekinensis clone KBrB096A21, complete sequence.
CU695272.1:108786-108805

AGCGCGCGTAGTCGTTGCGTTGCCGCCATA108786TGGAGATTGTCCTCCGATCACCGACTAAAAAGTTAGATCTTTGGTTTCAT

Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrB033O04, complete sequence.
AC189307.2:330-349

AGCGCGCGTAGTCGTTGCGTTGCCGCCATA330TGGAGATTGTCCTCCGATCACCGACTAAAAAGTTAGATCTTTGGTTTCAT

Brassica napus cultivar Xiang5A chromosome 14.
CP123889.1:25330959-25330978

AGCGCGCGTAGTCGTTGCGTTGCCGCCATA25330959TGGAGATTGTCCTCCGATCACCGACTAAAAAGTTAGATCTTTGGTTTCAT

Brassica napus genome assembly, chromosome: A04.
HG994358.1:19812165-19812184

AGCGCGCGTAGTCGTTGCGTTGCCGCCATA19812165TGGAGATTGTCCTCCGATCACCGACTAAAAAGTTAGATCTTTGGTTTCAT

60ACAB48_UP_012_G08_30SEP2004_052 Brassica napus seed library Brassica napus cDNA 5', mRNA sequence.
EE423173.1:3-22

GG3TGATCGGAGGACAATCTCCATATGGCGGCAACGCACCGACTACGCGCGCT

TSA: Brassica rapa subsp. pekinensis RNA, contig: CF3_9314.
FX699428.1:92-111

ATGAAACCAAAGATCTAACTTTTTAGTCGG92TGATCGGAGGACAATCTCCATATGGCGGCAACGCAACGACTACGCGCGCT

Brassica rapa subsp. pekinensis GSS, clone KBrH062A11, end read, primer SP6.
AJ861022.1:530-549

ATGAAACCAAAGATCTAACTTTTTAGTCGG530TGATCGGAGGACAATCTCCATATGGCGGCAACGCAACGACTACGCGCGCT

Data Export:

下記のフォーマットで最大100000件まで検索結果を取得できます。

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Debug Info:

0.009 | 0.009 | search_start;
0.393 | 0.385 | search_plus_done; http://172.18.8.135:50400/match?q=TGGAGATTGTCCTCCGATCA&k=0&no_gap=0&offset=0&limit=50
0.553 | 0.160 | search_minus_done; http://172.18.8.135:50400/match?q=TGATCGGAGGACAATCTCCA&k=0&no_gap=0&offset=0&limit=40
0.556 | 0.002 | cgi_end;

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