GGGenome Help | English

データベース：
 

ミスマッチ/ギャップを許容 ミスマッチのみ許容 ： 塩基まで (検索する配列長の25%まで)
双方向を検索 ＋方向のみ検索 －方向のみ検索

2025-03-15 16:26:55, GGGenome : DDBJ release 134.0 (Mar, 2024)

Summary:

Results:

検索語に色がつきます（ミスマッチ・挿入欠失）。

TSA: Lens culinaris contig07834.Lecu mRNA sequence.
JI854093.1:764-783
GTGTAATTCCTTCAAAGAAAACACCCGCCA764TGGAGGTTGTTTCTTCCCACGTCCGCTACGATCCGAAGCAATTCCACAAC
MBEFK89TF mth2 Medicago truncatula genomic clone 44P9, genomic survey sequence.
CG959823.1:66-85
GTGGAATTCCTTCAAAGAAAACACTCGCCA66TGGAGGTTGTTTCTTCCCACGTCCTTTTCTGCATAGGCAAAGACTCTAAT
Medicago truncatula clone mth2-68l7, WORKING DRAFT SEQUENCE, 24 unordered pieces.
AC229693.16:192976-192995
GTGTAATTCCTTCAAAGAAAACACTCGCCA192976TGGAGGTTGTTTCTTCCCACGTCCTTTTCTGCATAGGCAAAGACTCTAAT
Meles meles genome assembly, chromosome: 12.
OV277453.1:17879711-17879730
GCTTTCATACCGGGCTGCATTCAGGTGCTT17879711GTGGGAAGAAACAACCTCCATGCTTCTTTGACCCCAGGAAGTGGCAGGAT
EST317583 MHAM Medicago truncatula/Glomus versiforme mixed EST library cDNA clone pMHAM-51G23, mRNA sequence.
AW585960.1:287-306
GTTGCTTAAATGTTTCGGATCGAAAAGGAC287GTGGGAAGAAACAACCTCCATGGCGAGTGTTTTCTTTGAAAGAATTACAC
NF034C04NR1F1000 Nodulated root Medicago truncatula cDNA clone NF034C04NR 5', mRNA sequence.
AW685717.2:327-346
GTTGCTTAAATGTTTCGGATCGAAAAGGAC327GTGGGAAGAAACAACCTCCATGGCGAGTGTTTTCTTTGAAGGAATTACAC
EST433227 KV1 Medicago truncatula cDNA clone pKV1-18O12, mRNA sequence.
BF004729.1:287-306
CTTGCTTAAATGTTTCGGATCGAAAAGGAC287GTGGGAAGAAACAACCTCCATGGCGAGTGTTTTCTTTGAAGGAATTACAC
EST433228 KV1 Medicago truncatula cDNA clone pKV1-18O12, mRNA sequence.
BF004730.1:287-306
CTTGCTTAAATGTTTCGGATCGAAAAGGAC287GTGGGAAGAAACAACCTCCATGGCGAGTGTTTTCTTTGAAGGAATTACAC
NF057F09EC1F1079 Elicited cell culture Medicago truncatula cDNA clone NF057F09EC 5', mRNA sequence.
BF643960.1:365-384
GTTGCTTAAATGTTTCGGATCGAAAAGGAC365GTGGGAAGAAACAACCTCCATGGCGAGTGTTTTCTTTGAAGGAATTACAC
NF092E11DT1F1084 Drought Medicago truncatula cDNA clone NF092E11DT 5', mRNA sequence.
BG451698.1:334-353
GTTGCTTAAATGTTTCGGATCGAAAAGGAC334GTGGGAAGAAACAACCTCCATGGCGAGTGTTTTCTTTGAAGGAATTACAC
NF090A05LF1F1034 Developing leaf Medicago truncatula cDNA clone NF090A05LF 5', mRNA sequence.
BG452339.1:401-420
GTTGCTTAAATGTTTCGGATCGAAAAGGAC401GTGGGAAGAAACAACCTCCATGGCGAGTGTTTTCTTTGAAGGAATTACAC
NF061G07PL1F1054 Phosphate starved leaf Medicago truncatula cDNA clone NF061G07PL 5', mRNA sequence.
BG455530.1:262-281
GTTGCTTAAATGTTTCGGATCGAAAAGGAC262GTGGGAAGAAACAACCTCCATGGCGAGTGTTTTCTTTGAAGGAATTACAC
s13dNF35C06MJ039_247996 Methyl Jasmonate-Elicited Root Cell Suspension Culture Medicago truncatula cDNA, mRNA sequence.
CX530927.1:68-87
GTTGCTTAAATGTTTCGGATCGAAAAGGAC68GTGGGAAGAAACAACCTCCATGGCGAGTGTTTTCTTTGAAGGAATTACAC
ALF(R)-21_2007-08-10/ALF(R)-21_H13_029_1 Alfalfa (Medicago sativa) Trichome isolated from the stem Medicago sativa cDNA, mRNA sequence.
EX522364.1:196-215
AAGATTATNAAGGGTTTGTTTGAAAAGGAC196GTGGGAAGAAACAACCTCCATGGCGAGTGTTTTCTTTGAANGAATTACA
Glycyrrhiza uralensis cDNA, clone: S02198-25-D11, 5'-end sequence.
FS261475.1:397-416
GCTGTGGAAATACTTCGGATCGCAAAGGAC397GTGGGAAGAAACAACCTCCATGGAGGGTGTTTTCTTTGAAGGAATTACAC
Trifolium repens mRNA, clone: WCC36j15, unspecified EST.
FY466861.1:212-231
GTTGTGGAATTGCTTCGGATCGCAAAGGAC212GTGGGAAGAAACAACCTCCATGGCGGGTGTTTTCTTTGAAGGAATTACAC
MEUBI53TF JCVI-MT2 Medicago truncatula cDNA 5', mRNA sequence.
GE348446.1:16-35
GGGATCGAAAAGGAC16GTGGGAAGAAACAACCTCCATGGCGAGTGTTTTCTTTGAAGGAATTACAC
LCUSE1NG_T3_003_E04_13JUN2007_024 LCUSE1NG Lens culinaris cDNA, mRNA sequence.
GT618866.1:290-309
GTTGTGGAATTGCTTCGGATCGTAGCGGAC290GTGGGAAGAAACAACCTCCATGGCGGGTGTTTTCTTTGAAGGAATTACAC
Medicago truncatula chromosome 2 BAC clone mth2-134c16, complete sequence.
AC159141.5:106441-106460
ATTAGAGTCTTTGCCTATGCAGAAAAGGAC106441GTGGGAAGAAACAACCTCCATGGCGAGTGTTTTCTTTGAAGGAATTACAC
Trifolium repens isolate ACLI19 chromosome 06_0cc.
CP125846.1:59803423-59803442
ATGAGAGTCTCTACCAATGCAGCAAAGGAC59803423GTGGGAAGAAACAACCTCCATGGCGGGTGTTTTCTTTGAAGGAATTACAC
Trifolium repens isolate ACLI19 chromosome 06_Pall.
CP125847.1:61418196-61418215
ATGAGAGTCTCTACCAATGCAGCAAAGGAC61418196GTGGGAAGAAACAACCTCCATGGCGGGTGTTTTCTTTGAAGGAATTACAC
Trifolium subterraneum genome assembly, chromosome: 1.
OX637461.1:68484400-68484419
ATGAGAGTCTCTACCAATGCAGCAAAGGAC68484400GTGGGAAGAAACAACCTCCATGGCGGGTGTTTTCTTTGAAGGAATTACAC
Medicago lupulina genome assembly, chromosome: 1.
OY283139.1:90159581-90159600
ATTAGAGTCTTTGCTTATGCAGAAAAGGAC90159581GTGGGAAGAAACAACCTCCATGGCGAGTGTTTTCTTTGAAGGAATTACAC
Lathyrus aphaca genome assembly, chromosome: 1.
OZ014519.1:743203138-743203157
TTAGAGATCTGTATCGATGCAGAAGCGGAC743203138GTGGGAAGAAACAACCTCCATGGCGGGTGTTTTCTTTGAAGGAATTACAC

Data Export:

下記のフォーマットで最大100000件まで検索結果を取得できます。

Debug Info:

Redirect URI : https://gggenome.dbcls.jp/ja/ddbj/TGGAGGTTGTTTCTTCCCAC
lang : ja | db : ddbj | k : 0 | strand : | nogap : | query_string : TGGAGGTTGTTTCTTCCCAC | format : html | download : | debug : 

0.009 | 0.009 | search_start;
0.113 | 0.104 | search_plus_done; http://172.18.8.135:50400/match?q=TGGAGGTTGTTTCTTCCCAC&k=0&no_gap=0&offset=0&limit=50
0.646 | 0.534 | search_minus_done; http://172.18.8.135:50400/match?q=GTGGGAAGAAACAACCTCCA&k=0&no_gap=0&offset=0&limit=47
0.660 | 0.014 | cgi_end;

GGGenome by @meso_cacase at DBCLS
This page is licensed under a Creative Commons Attribution 4.0 International License (CC BY 4.0).