GGGenome | Results

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2025-04-12 21:48:27, GGGenome : DDBJ release 134.0 (Mar, 2024)

Summary:

Results:

Matches are highlighted with blue background. Mismatches and in~~dels~~ are marked in red.

Sciurus carolinensis genome assembly, chromosome: 1.
LR738590.1:55690559-55690578

TAGATTTTCACTTGACATACATTTATTGAA55690559TGGATAAGGACCAGGCAAAGAAGTTGAGGCTATAGCCCTGAACTCCTGCT

Rana temporaria genome assembly, chromosome: 9.
LR991688.1:131710563-131710582

CATCCAAGGAGGTGGACACAATAATATCAT131710563TGGATAAGGACCAGGCAAAGTCACTGACGGCACCTGTGTGTCCTCGCAGA

Conger conger genome assembly, chromosome: 13.
OY741326.1:38030052-38030071

TTTTCACACATTTTGCCCATGGCTAAGATC38030052TGGATAAGGACCAGGCAAAGGGGATTCACCAAGGTCATGAGCAGAACACT

Embrapa_Musa_ABB_NonStressed_Cachaco_OM26TF Embrapa_Musa_Cachaco_ABB_NonStressed Musa ABB Group cDNA, mRNA sequence.
FL659694.1:359-378

ATCAGATCTCGCTATGGGATCACATAATCC359TGGATAAGGACCAGGCAAAGTTCCAGACAAAGGTGACCACCAAGTATCCT

Embrapa_Musa_ABB_Stressed_Cachaco_D273TFB Embrapa_Musa_Cachaco_ABB_Stressed Musa ABB Group cDNA, mRNA sequence.
FL660025.1:372-391

ATCAGATCTCGCTATGGGATCACATAATCC372TGGATAAGGACCAGGCAAAGTTCCAGACAAAGGTGACCACCAAGTATCCT

Embrapa_Musa_ABB_Stressed_Cachaco_DN43TF Embrapa_Musa_Cachaco_ABB_Stressed Musa ABB Group cDNA, mRNA sequence.
FL661803.1:79-98

ATCAGATCTCGCTATGGGATCACATAATCC79TGGATAAGGACCAGGCAAAGTTCCAGACAAAGGTGACCACCAAGTATCCT

Embrapa_Musa_ABB_Stressed_Cachaco_E075TF Embrapa_Musa_Cachaco_ABB_Stressed Musa ABB Group cDNA, mRNA sequence.
FL662979.1:356-375

ACCAGATCTCGCTATGGGATCACATAATCC356TGGATAAGGACCAGGCAAAGTTCCAGACAAAGGTGACCACCAAGTATCCT

TSA: Musa acuminata AAA Group Unigene86304_NK1 mRNA sequence.
JV446836.1:340-359

ACCAGATCTCGCTATGGGATCACATAATCC340TGGATAAGGACCAGGCAAAGTTCCAGACAAAGGTGACCACCAAGTATCCT

Sciurus vulgaris genome assembly, chromosome: 1.
LR738611.1:156672836-156672855

AGCAGGAGTTCAGGGCTATAGCCTCAACTT156672836CTTTGCCTGGTCCTTATCCATTCAATAAATGTATGTCAAGTGAAAATCTA

Bufo bufo genome assembly, chromosome: 8.
LR991674.1:11735688-11735707

CCTACGAGGGCACAGCGGTCCAGTCAGCGA11735688CTTTGCCTGGTCCTTATCCAACGACATCATTGTCTCCACCTCTCTGGATG

TSA: Musa acuminata AAA Group Unigene83160_B1 mRNA sequence.
JV351443.1:236-255

AGGATACTTGGTGGTCACCTTTGTCTGGAA236CTTTGCCTGGTCCTTATCCAGGATTATGTGATCCCATAGCGAGATCTGGT

Musa troglodytarum cultivar karat chromosome 2.
CP097504.1:43352838-43352857

AGGATACTTGGTGGTCACCTTTGTCTGGAA43352838CTTTGCCTGGTCCTTATCCAGGATTATGTGATCCCATAGTGAGATCTGAA

Musa acuminata subsp. malaccensis isolate AA chromosome 2.
CP126371.1:25768570-25768589

AGGATACTTGGTGGTCACCTTTGTCTGGAA25768570CTTTGCCTGGTCCTTATCCAGGATTATGTGATCCCATAGCGAGATCTGAA

Musa acuminata subsp. malaccensis isolate AA chromosome 13.
CP126382.1:25873898-25873917

AGGATACTTGGTGGTCACCTTTGTCTGGAA25873898CTTTGCCTGGTCCTTATCCAGGATTATGTGATCCCATAGCGAGATCTGAA

Musa acuminata subsp. malaccensis strain Doubled-haploid Pahang (DH-Pahang) genome assembly, chromosome: A02.
HG996467.1:24407846-24407865

AGGATACTTGGTGGTCACCTTTGTCTGGAA24407846CTTTGCCTGGTCCTTATCCAGGATTATGTGATCCCATAGCGAGATCTGAA

Data Export:

Maximum 100000 results can be retrieved in various formats shown below:

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You can copy-paste the result into spreadsheet softwares (e.g. Excel) or text editors.
CSV format: Open in new window | Download
You can open CSV files using spreadsheet softwares (e.g. Excel) or text editors.
BED format: Link | Download
GFF format: Link | Download
JSON format: Link | Download

Debug Info:

0.009 | 0.009 | search_start;
0.388 | 0.379 | search_plus_done; http://172.18.8.135:50400/match?q=TGGATAAGGACCAGGCAAAG&k=0&no_gap=0&offset=0&limit=50
0.439 | 0.052 | search_minus_done; http://172.18.8.135:50400/match?q=CTTTGCCTGGTCCTTATCCA&k=0&no_gap=0&offset=0&limit=42
0.444 | 0.005 | cgi_end;

GGGenome by @meso_cacase at DBCLS
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