GGGenome Help | Japanese

Database:
 

Max number of mismatches/gaps mismatches : (no more than 25% of the query length)
Search for: both strand plus strand minus strand

2025-04-09 07:43:57, GGGenome : DDBJ release 134.0 (Mar, 2024)

Summary:

Results:

Matches are highlighted with blue background. Mismatches and indels are marked in red.

Trifolium pratense cDNA clone:RCE07179.
BB908554.1:152-172
AAAAATCATAGCTGAATACATATGGATTGG152TGGATCAGGTTTGGACTTGAGGAGCAAAGCAAGGACTCTTCCAGGACCAGT
Trifolium pratense cDNA clone:RCE12219.
BB912888.1:152-172
AAAAATCATAGCTGAATACATATGGATTGG152TGGATCAGGTTTGGACTTGAGGAGCAAAGCAAGGACTCTTCCAGGACCAGT
Trifolium pratense cDNA clone:RCE14167.
BB914585.1:30-50
AAAATCATAGCTGAATACATATGGATTGG30TGGATCAGGTTTGGACTTGAGGAGCAAAGCAAGGACTCTTCCAGGACCAGT
Trifolium repens mRNA, clone: WCC21d18_090, unspecified EST.
FY461384.1:128-148
GAAAATCATAGCTGAATATATTTGGATTGG128TGGATCAGGTTTGGACTTGAGGAGCAAAGCAAGGACTCTTCCAGGACCAGT
Trifolium repens mRNA, clone: WCC32e14_019, unspecified EST.
FY465313.1:127-147
GAAAATCATAGCTGAATATATTTGGATTGG127TGGATCAGGTTTGGACTTGAGGAGCAAAGCAAGGACTCTTCCAGGACCAGT
Trifolium repens mRNA, clone: WCC32j23_070, unspecified EST.
FY465438.1:126-146
GAAAATCATAGCTGAATATATTTGGATTGG126TGGATCAGGTTTGGACTTGAGGAGCAAAGCAAGGACTCTTCCAGGACCAGT
Trifolium repens isolate ACLI19 chromosome 03_Occ.
CP125840.1:4632601-4632621
TTTTTATTTTCATTATGATTATAGGATTGG4632601TGGATCAGGTTTGGACTTGAGGAGCAAAGCAAGGGTAATTAATTTCTAGTT
Trifolium repens isolate ACLI19 chromosome 03_Pall.
CP125841.1:4515237-4515257
TTTTTATTTTCATTATGATGATAGGATTGG4515237TGGATCAGGTTTGGACTTGAGGAGCAAAGCAAGGGTAATTAAATAAAAAAA
Trifolium fragiferum genome assembly, chromosome: 6.
OX940794.1:4766058-4766078
TTTTTATTTTCATTATGATGATAGGATTGG4766058TGGATCAGGTTTGGACTTGAGGAGCAAAGCAAGGGTAATTCATTTCTTGTT

Data Export:

Maximum 100000 results can be retrieved in various formats shown below:

Debug Info:

Redirect URI : https://gggenome.dbcls.jp/en/ddbj/TGGATCAGGTTTGGACTTGAG
lang : en | db : ddbj | k : 0 | strand : | nogap : | query_string : TGGATCAGGTTTGGACTTGAG | format : html | download : | debug : 

0.009 | 0.009 | search_start;
0.338 | 0.330 | search_plus_done; http://172.18.8.135:50400/match?q=TGGATCAGGTTTGGACTTGAG&k=0&no_gap=0&offset=0&limit=50
0.360 | 0.021 | search_minus_done; http://172.18.8.135:50400/match?q=CTCAAGTCCAAACCTGATCCA&k=0&no_gap=0&offset=0&limit=41
0.360 | 0.000 | cgi_end;

GGGenome by @meso_cacase at DBCLS
This page is licensed under a Creative Commons Attribution 4.0 International License (CC BY 4.0).