GGGenome Help | Japanese

Database:
 

Max number of mismatches/gaps mismatches : (no more than 25% of the query length)
Search for: both strand plus strand minus strand

2025-04-09 09:28:24, GGGenome : DDBJ release 134.0 (Mar, 2024)

Summary:

Results:

Matches are highlighted with blue background. Mismatches and indels are marked in red.

Podarcis lilfordi genome assembly, chromosome: 10.
OX395135.1:20872569-20872588
AGCACCATAGGCACAGACGGTGGGAAAAGC20872569TGGATTTTGTTGTGGAAGCAGAAGGCGAAACCTTGGCTGGCTGGATATAG
Zootoca vivipara genome assembly, chromosome: 10.
OY735911.1:20647406-20647425
AGCATCATAGGCACAGACGATGGGGAAAGC20647406TGGATTTTGTTGTGGAAGCAGAAGGCGAAACCTTGGCTGGCTGGATATAG
KS20006E12 KS20 Capsicum annuum cDNA, mRNA sequence.
GD093879.1:413-432
TAGGAGAACAAAGTGCGATTCAAAAGTAAT413TGGATTTTGTTGTGGAAGCAATTTGTTTGCTGATTGAAAAAGTGATGGAT
TSA: Capsicum annuum MGMT_Contig38895 mRNA sequence.
JW089139.1:473-492
TAGGAGAACAAAGTGCGATTCAAAAGTAAT473TGGATTTTGTTGTGGAAGCAATTTGTTTGCTGATTGAAAAAGTGATGGAT
Capsicum annuum Takanotsume DNA, chromosome 8, sequence.
AP026703.1:161534783-161534802
TAGGAGAACAAAGTGCGATTCAAAAGTAAT161534783TGGATTTTGTTGTGGAAGCAATTTGTTTGCTGATTGAAAAAGTGATGGAT
Capsicum annuum cultivar G1-36576 isolate CaT2T chromosome 8.
CP124724.1:174277247-174277266
TAGGAGAACAAAGTGCGATTCAAAAGTAAT174277247TGGATTTTGTTGTGGAAGCAATTTGTTTGCTGATTGAAAAAGTGATGGAT
Sphagnum tenellum genome assembly, chromosome: 12.
OY998153.1:4575860-4575879
CTGGGTGGCACTGCATAAATTTTGCAACTT4575860TGGATTTTGTTGTGGAAGCAAAGAGATGTTTGATGAACTGGGATTTCTTT
Myrrha octodecimguttata genome assembly, chromosome: 9.
OY294064.1:41644578-41644597
GGTGTTATCTACGTGGGAAAGTTGACAAGA41644578TGGATTTTGTTGTGGAAGCAAGTTATGGAAATTTTGGCACTTCAGGTTGC
Sciaenops ocellatus chromosome 14.
CP136879.1:8457105-8457124
ATGAGAAGACGAGCGCCTCCCTCCTGCGAC8457105TGCTTCCACAACAAAATCCACCCCACGTTTCACCAGTTGGATGCTTTTAA
Danio rerio genome assembly, chromosome: 6.
LR812043.1:38229019-38229038
CTCAAAAATAATACATTTACAAAGTTTTCA38229019TGCTTCCACAACAAAATCCAATTCGTTAGTTTAAAATACGATTCAAAAAT
Danio rerio genome assembly, chromosome: 6.
LR812068.1:37776268-37776287
CTCAAAAATAATACATTTACAAAGTTTTCA37776268TGCTTCCACAACAAAATCCAATTCGTTAGTTTAAAATACGATTCAAAAAT
Danio rerio strain Nadia (NA) genome assembly, chromosome: 6.
LR812574.1:37208941-37208960
CTCAAAAATAATACATTTACAAAGTTTTCA37208941TGCTTCCACAACAAAATCCAATTCGTTAGTTTAAAATACGATTCAAAAAT
Danio rerio genome assembly, chromosome: 6.
LR812599.1:35246408-35246427
CTCAAAAATAATACATTTACAAAGTTTTCA35246408TGCTTCCACAACAAAATCCAATTCGTTAGTTTAAAATACGATTCAAAAAT
Telmatherina bonti genome assembly, chromosome: 22.
OW121842.1:8666040-8666059
AAAAACAAATTTCAGTCCAATTTGCAGCAG8666040TGCTTCCACAACAAAATCCATTTTTGAAAGCTTCAAACAAACATCACACT
Danio rerio genome assembly, chromosome: 6.
OX063295.1:40400455-40400474
CTCAAAAATAATACATTTACAAAGTTTTCA40400455TGCTTCCACAACAAAATCCAATTCGTTAGTTTAAAATACGATTCAAAAAT
Podarcis cretensis genome assembly, chromosome: 10.
OX638158.1:53782214-53782233
CTATATCCAGCCAGCCAAGGTTTCGCCTTC53782214TGCTTCCACAACAAAATCCAGCTTTTCCCACCGTCTGTGCCTATGGTGCT

Data Export:

Maximum 100000 results can be retrieved in various formats shown below:

Debug Info:

Redirect URI : https://gggenome.dbcls.jp/en/ddbj/TGGATTTTGTTGTGGAAGCA
lang : en | db : ddbj | k : 0 | strand : | nogap : | query_string : TGGATTTTGTTGTGGAAGCA | format : html | download : | debug : 

0.009 | 0.009 | search_start;
0.233 | 0.224 | search_plus_done; http://172.18.8.135:50400/match?q=TGGATTTTGTTGTGGAAGCA&k=0&no_gap=0&offset=0&limit=50
0.295 | 0.063 | search_minus_done; http://172.18.8.135:50400/match?q=TGCTTCCACAACAAAATCCA&k=0&no_gap=0&offset=0&limit=42
0.301 | 0.005 | cgi_end;

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