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ミスマッチ/ギャップを許容 ミスマッチのみ許容 ： 塩基まで (検索する配列長の25%まで)
双方向を検索 ＋方向のみ検索 －方向のみ検索

2025-04-03 15:46:04, GGGenome : DDBJ release 134.0 (Mar, 2024)

Summary:

Results:

検索語に色がつきます（ミスマッチ・挿入欠失）。

Sciurus carolinensis genome assembly, chromosome: 14.
LR738604.1:73416451-73416468
AGGAGGGGAAGTATTGCTGTGCAAGAGAAG73416451TGGCATCAGCAGTCGTTGGGGGCTTAAAATTCACAGATTTTTCCTTCC
Arvicola amphibius genome assembly, chromosome: 1.
LR862380.1:78266985-78267002
CTTGAAGGATGTTGGCAGCAGGACCAAGAG78266985TGGCATCAGCAGTCGTTGTAGGTAGCAGCAGCAGCAGCAGCAATAGCA
Acanthopagrus latus isolate v.2019 genome assembly, chromosome: 14.
LR884473.1:17620222-17620239
TTGTTTCTCTTGGCAACAGTTTTTATTCTT17620222TGGCATCAGCAGTCGTTGTAATTGCCAGTTGTATATAACCATGTGTCT
uncultured Marinobacterium sp. isolate 9dab0b5a-edc3-4719-b21f-a034148b1e2d genome assembly, chromosome: 1.
OY760936.1:1120960-1120977
TGACAGAGCCGCATGGGCCGGGCTGGTCGA1120960TGGCATCAGCAGTCGTTGCACCGCGTGCTGCGACTTGAAATGGCGCTT
uncultured Marinobacterium sp. isolate 9cf205ba-bb1a-4792-878f-362de8ec88fb genome assembly, chromosome: 1.
OY776635.1:1890383-1890400
TGACAGAGCCGCATGGGCCGGGCTGGTCGA1890383TGGCATCAGCAGTCGTTGCACCGCGTGCTGCGACTTGAAATGGCGCTT
Pseudomonas syringae pv. phaseolicola type III effector AvrB3 gene, complete cds.
AY803993.1:311-328
TCTGGATCACCGGAAAGGAGTGAATTGACT311TGGCATCAGCAGTCGTTGGTTGGCGTAGCCCGATGGCCTGACAAAGAA
Pseudomonas savastanoi pv. phaseolicola 1448A chromosome, complete genome.
CP000058.1:3515532-3515549
TCTGGATCACCGGAAAGGAGTGAATTGACT3515532TGGCATCAGCAGTCGTTGGTTGGCGTAGCCCGATGGCCTGACAAAGAA
Enterobacter sp. 638 chromosome, complete genome.
CP000653.1:3272855-3272872
AGTCGGCAGAGAAGTTCATGACCAGCGCGT3272855TGGCATCAGCAGTCGTTGCTGCAACGCCAGCCTGATCGGTAGGCAGTG
Pseudomonas sp. KBS0707 chromosome, complete genome.
CP041754.1:3438617-3438634
TCTGGATCACCGGAAAGGAGTGAATTGACT3438617TGGCATCAGCAGTCGTTGGTTGGCGTAGCCCGATGGCCTGACAAAGAA
Lelliottia amnigena strain A167 chromosome, complete genome.
CP042361.1:3280563-3280580
AGTCGGCAGAGAAGTTCATGACCAGCGCGT3280563TGGCATCAGCAGTCGTTGCTGCAACGCCAGCCTGATCGGTAGGCAGTG
Pseudomonas amygdali pv. lachrymans strain 8 plasmid pPAL8-03, complete sequence.
CP075689.1:4066-4083
TCTGGATCACCGGAAAGGAGTGAATTGACT4066TGGCATCAGCAGTCGTTGGTTGGCGTAGCCCGATGGCCTGACAAAGAA
Myopa tessellatipennis genome assembly, chromosome: 1.
OX031314.1:69203649-69203666
CTTTTGTCGAACGCTTTCGATCGTATCGAA69203649TGGCATCAGCAGTCGTTGGTCACTTTAAATTCCTGACAGCTGGCTGCA
Nephrocerus scutellatus genome assembly, chromosome: 2.
OX352762.1:116829038-116829055
AACATCAACAAGACAACGATGCACAGAATT116829038TGGCATCAGCAGTCGTTGCGTCGAATTTTGGACAAAGATTTGAAGATG
Atherix ibis genome assembly, chromosome: 2.
OY282606.1:5051618-5051635
ATGAATGTATCTATGCTCGTAGACAAGAAG5051618TGGCATCAGCAGTCGTTGAAAACGAATCTAACTGCAGTTAGAGCGTTT
Tetragnatha montana genome assembly, chromosome: 9.
OY796683.1:4740133-4740150
GATCACCACTGCTTCCTCTAGAGACCAAGA4740133TGGCATCAGCAGTCGTTGGATTAAATCCATGGGTGGATTTAGGGGGAG
uncultured Marinobacterium sp. isolate 484d4edc-a3c6-43da-b6ac-40affc39f14b genome assembly, chromosome: 1.
OY781041.1:321251-321268
AAGCGCCATTTCAAGTTGCCGCACGCGGTG321251CAACGACTGCTGATGCCATCGACCAGCCCGGCCCATGCTTCTCTGTCA
uncultured Marinobacterium sp. isolate a0847272-73cf-4931-aaf8-19bea7868d16 genome assembly, chromosome: 1.
OY782520.1:2559946-2559963
AAGCGCCATTTCAAGTCGCAGCACGCGGTG2559946CAACGACTGCTGATGCCATCGACCAGCCCGGCCCATGCGGCTCTGTCA
uncultured Marinobacterium sp. isolate fe3c676d-63b0-40a1-b428-f9f2f0dbe5b7 genome assembly, chromosome: 1.
OY782668.1:2659769-2659786
AAGCGCCATTTCAAGTCGCAGCACGCGGTG2659769CAACGACTGCTGATGCCATCGACCAGCCCGGCCCATGCGGCTCTGTCA
TSA: Pisum sativum Ps_contig_mira-ass_77140 mRNA sequence.
JI961488.1:56-73
TAAGGTAACGTAAAGAACGAAAATAACCAC56CAACGACTGCTGATGCCATGCTGCTGCTAGCCATGAATAACTATCGCT
Solanum dulcamara genome assembly, chromosome: 1.
OX359252.1:5960037-5960054
CTACAACTGAGCAAATTGCTTGGGTTGCAG5960037CAACGACTGCTGATGCCATCTCAAGAAAGGAGAAAGAAGGTCTATCAA
Pseudomonas savastanoi pv. phaseolicola 1448A chromosome, complete genome.
CP000058.1:928381-928398
TTCTTTGTCAGGCCATCGGGCTACGCCAAC928381CAACGACTGCTGATGCCAAGTCAATTCACTCCTTTCCGGTGATCCAGA
Pseudomonas sp. KBS0707 chromosome, complete genome.
CP041754.1:843992-844009
TTCTTTGTCAGGCCATCGGGCTACGCCAAC843992CAACGACTGCTGATGCCAAGTCAATTCACTCCTTTCCGGTGATCCAGA
Photobacterium sp. CCB-ST2H9 plasmid unnamed1, complete sequence.
CP100427.1:49473-49490
GAGGAAGCTCGCCGTGGATTTTTTCATACT49473CAACGACTGCTGATGCCATTCCTGTCGCGATTTCTTTGCGGTGTTCAG
Pseudomonas amygdali pv. lachrymans strain YM7902 plasmid pPlaYM7902D, complete sequence.
CP127049.1:30978-30995
TTCTTTGTCAGGCCATCGGGCTACGCCAAC30978CAACGACTGCTGATGCCAAGTCAATTCACTCCTTTCCGGTGATCCAGA
Volucella inanis genome assembly, chromosome: 5.
OU026157.1:23548423-23548440
AATCTTCAGATCTTTCACCAAAATTCGAAC23548423CAACGACTGCTGATGCCAAACTGTGTGCGTCGTTTTCTCGTCGACGGT
Malachius bipustulatus genome assembly, chromosome: 3.
OU342632.1:26768462-26768479
TGCTCTTGAACACCGTTGCTTCTGCTGATC26768462CAACGACTGCTGATGCCAATACTATATGGTTATTGGTGCTGATACCAT
Leptodirus hochenwarti genome assembly, chromosome: 4.
OX371179.1:32341678-32341695
CATATATTGGTTTTGACCTATAACATGGGT32341678CAACGACTGCTGATGCCATTACATCGAATGTAGTTGGCATTTTATCCC
Thysanoteuthis rhombus genome assembly, chromosome: 7.
OY735204.1:34076937-34076954
AATCCTAGCATTTTCCCATCTCAGTTTAAA34076937CAACGACTGCTGATGCCAGTCTTCATGCAACAGTATGTGCGTTGATAC

Data Export:

下記のフォーマットで最大100000件まで検索結果を取得できます。

Debug Info:

Redirect URI : https://gggenome.dbcls.jp/ja/ddbj/TGGCATCAGCAGTCGTTG
lang : ja | db : ddbj | k : 0 | strand : | nogap : | query_string : TGGCATCAGCAGTCGTTG | format : html | download : | debug : 

0.009 | 0.009 | search_start;
0.179 | 0.170 | search_plus_done; http://172.18.8.135:50400/match?q=TGGCATCAGCAGTCGTTG&k=0&no_gap=0&offset=0&limit=50
0.341 | 0.163 | search_minus_done; http://172.18.8.135:50400/match?q=CAACGACTGCTGATGCCA&k=0&no_gap=0&offset=0&limit=35
0.350 | 0.009 | cgi_end;

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