GGGenome Help | English

データベース：
 

ミスマッチ/ギャップを許容 ミスマッチのみ許容 ： 塩基まで (検索する配列長の25%まで)
双方向を検索 ＋方向のみ検索 －方向のみ検索

2025-04-12 07:11:50, GGGenome : DDBJ release 134.0 (Mar, 2024)

Summary:

Results:

検索語に色がつきます（ミスマッチ・挿入欠失）。

Malus x robusta genome assembly, chromosome: 5.
OY720329.1:38733425-38733444
GGAGTACTCTCTAAACGTTCATGGTAAAAG38733425TGGCATTATACACGCACTCTATATTGGATAAGAAGAGTTGCAGAGCCGCA
Pyrus communis genome assembly, chromosome: 8.
OY757075.1:25696680-25696699
GGAGTACTCTCTAAACGTTCATGGTAAAAG25696680TGGCATTATACACGCACTCTATATTGGATAAGAAGGGTTGCAGAGCCGCA
Malus hybrid cultivar cultivar Flame chromosome 11.
CP141920.1:2408468-2408487
TGCGGCTCTGCAACTCTTCTTATCCAATAT2408468AGAGTGCGTGTATAATGCCACTTTTACCATGAACGTTTAGAGAGTACTCC
Malus hybrid cultivar cultivar Flame chromosome 11.
CP141937.1:2363071-2363090
TGCGGCTCTGCAACTCTTCCTATCCAATAT2363071AGAGTGCGTGTATAATGCCACTTTTACCATGAACGTTTAGAGAGTACTCC
Malus hybrid cultivar cultivar Royalty chromosome 11.
CP141963.1:2457200-2457219
TGCGGCTCTGCAACTCTTCCTATCCAATAT2457200AGAGTGCGTGTATAATGCCACTTTTACCATGAACGTTTAGAGAGTACTCC
Malus hybrid cultivar cultivar Royalty chromosome 11.
CP141980.1:2561472-2561491
TGCGGCTCTGCAACTCTTCTTATCCAATAT2561472AGAGTGCGTGTATAATGCCACTTTTACCATGAACGTTTAGAGAGTACTCC
Malus hybrid cultivar cultivar SH6 chromosome 11.
CP143368.1:2349423-2349442
TGCGGCTCTGCAACTCTTCCTATCCAATAT2349423AGAGTGCGTGTATAATGCCACTTTTACCATGAACGTTTAGAGAGTACTCC
Malus hybrid cultivar cultivar SH6 chromosome 11.
CP143385.1:2433168-2433187
TGCGGCTCTGCAAATCTTCTTATCCAATAT2433168AGAGTGCGTGTATAATGCCACTTTTACCATGAACGTTTAGAGAGTACTCC
Malus sylvestris genome assembly, chromosome: 11.
OU696513.1:2522088-2522107
TGCGGCTCTGCAACTCTTCCTATCCAATAT2522088AGAGTGCGTGTATAATGCCACTTTTACCATGAACGTTTAGAGAGTACTCC
Malus domestica genome assembly, chromosome: 11.
OU696687.1:2514671-2514690
TGCGGCTCTGCAACTCTTCCTATCCAATAT2514671AGAGTGCGTGTATAATGCCACTTTTACCATGAACGTTTAGAGAGTACTCC
Malus domestica genome assembly, chromosome: 11.
OU744552.1:2571932-2571951
TGCGGCTCTGCAACTCTTCCTATCCAATAT2571932AGAGTGCGTGTATAATGCCACTTTTACCATGAACGTTTAGAGAGTACTCC
Malus domestica genome assembly, chromosome: 11.
OU744963.1:2605987-2606006
TGCGGCTCTGCAACTCTTCCTATCCAATAT2605987AGAGTGCGTGTATAATGCCACTTTTACCATGAACGTTTAGAGAGTACTCC
Malus domestica genome assembly, chromosome: 11.
OU745001.1:2583918-2583937
TGCGGCTCTGCAACTCTTCCTATCCAATAT2583918AGAGTGCGTGTATAATGCCACTTTTACCATGAACGTTTAGAGAGTACTCC

Data Export:

下記のフォーマットで最大100000件まで検索結果を取得できます。

Debug Info:

Redirect URI : https://gggenome.dbcls.jp/ja/ddbj/TGGCATTATACACGCACTCT
lang : ja | db : ddbj | k : 0 | strand : | nogap : | query_string : TGGCATTATACACGCACTCT | format : html | download : | debug : 

0.009 | 0.009 | search_start;
0.382 | 0.374 | search_plus_done; http://172.18.8.135:50400/match?q=TGGCATTATACACGCACTCT&k=0&no_gap=0&offset=0&limit=50
0.492 | 0.109 | search_minus_done; http://172.18.8.135:50400/match?q=AGAGTGCGTGTATAATGCCA&k=0&no_gap=0&offset=0&limit=48
0.499 | 0.008 | cgi_end;

GGGenome by @meso_cacase at DBCLS
This page is licensed under a Creative Commons Attribution 4.0 International License (CC BY 4.0).