GGGenome Help | Japanese

Database:
 

Max number of mismatches/gaps mismatches : (no more than 25% of the query length)
Search for: both strand plus strand minus strand

2025-04-04 23:34:33, GGGenome : DDBJ release 134.0 (Mar, 2024)

Summary:

Results:

Matches are highlighted with blue background. Mismatches and indels are marked in red.

Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrB084M06, complete sequence.
AC189491.2:139902-139921
CATTTTTTTCCTTGGGTAACTTATGTAATC139902TGGCATTGACAGAGCTAGTAAGAGTTAAGACTAATACTAATTCTTGTTAT
Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrB084M06, complete sequence.
AC189491.2:140492-140511
CATTTTTTTCCTTGGGTAACTTATGTAATC140492TGGCATTGACAGAGCTAGTAAGAGTTAAGACTAATACTAATTCTTGTTAT
Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrB084M06, complete sequence.
AC189491.2:141124-141143
CATTTTTTTCCTTGGGTAACTTATGTAATC141124TGGCATTGACAGAGCTAGTAAGAGTTAAGACTAATACTAATTCTTGTTAT
Brassica napus cultivar Xiang5A chromosome 3.
CP123878.1:20333697-20333716
TCCTTTTTTCCTTGGGTAACTTATGTAATC20333697TGGCATTGACAGAGCTAGTAAGAGTTAAGACTAATACTAATTCTTGTTAT
Brassica rapa genome, scaffold: A03.
LR031572.1:20091089-20091108
TCCTTTTTTCCTTGGGTAACTTATGTAATC20091089TGGCATTGACAGAGCTAGTAAGAGTTAAGACTAATACTAATTCTTGTTAT
Brassica rapa genome assembly, chromosome: A03.
LS974619.2:20217773-20217792
TCCTTTTTTCCTTGGGTAACTTATGTAATC20217773TGGCATTGACAGAGCTAGTAAGAGTTAAGACTAATACTAATTCTTGTTAT
KBrB028G12F KBrB, Brassica rapa BamHI BAC library Brassica rapa subsp. pekinensis genomic clone KBrB028G12, genomic survey sequence.
DX031551.1:727-746
ATAACAAGAATTAGTATTAGTCTTAACTCT727TACTAGCTCTGTCAATGCCAGATTACATAAGTTACCCAAGGAAAAAAATG
KBrB067H16F KBrB, Brassica rapa BamHI BAC library Brassica rapa subsp. pekinensis genomic clone KBrB067H16, genomic survey sequence.
DX061055.1:736-755
ATAACAAGAATTAGTATTAGTCTTAACTCT736TACTAGCTCTGTCAATGCCAGATTACATAAGTTACCCAAGGAAAAAAATG
Protoeuglena noctilucae genome assembly, chromosome: 17.
OY253684.1:479276-479295
CCCCCCCCCCCCTGCGTCCTCTCATCGTGT479276TACTAGCTCTGTCAATGCCACGCCATATATCCCCATCTCTCTCATCTCTC

Data Export:

Maximum 100000 results can be retrieved in various formats shown below:

Debug Info:

Redirect URI : https://gggenome.dbcls.jp/en/ddbj/TGGCATTGACAGAGCTAGTA
lang : en | db : ddbj | k : 0 | strand : | nogap : | query_string : TGGCATTGACAGAGCTAGTA | format : html | download : | debug : 

0.008 | 0.008 | search_start;
0.101 | 0.092 | search_plus_done; http://172.18.8.135:50400/match?q=TGGCATTGACAGAGCTAGTA&k=0&no_gap=0&offset=0&limit=50
0.168 | 0.067 | search_minus_done; http://172.18.8.135:50400/match?q=TACTAGCTCTGTCAATGCCA&k=0&no_gap=0&offset=0&limit=44
0.170 | 0.002 | cgi_end;

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