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ミスマッチ/ギャップを許容 ミスマッチのみ許容 ： 塩基まで (検索する配列長の25%まで)
双方向を検索 ＋方向のみ検索 －方向のみ検索

2025-03-14 20:59:38, GGGenome : DDBJ release 134.0 (Mar, 2024)

Summary:

Results:

検索語に色がつきます（ミスマッチ・挿入欠失）。

Muntiacus reevesi genome assembly, chromosome: 15.
OZ005639.1:27915342-27915361
GACAGTGGTTTGTAAATGTTTTCTCCTCAC27915342TGGCGAATTTTCTTTTCGTTCACTTAACAATGTTCATCACAGAGCAAAAG
RR3AS05TF RR3(NY) Raphanus raphanistrum subsp. raphanistrum cDNA 5', mRNA sequence.
EV550087.1:66-85
CTTCGCTATAAGCGAATTTCAGTTTCGCGC66TGGCGAATTTTCTTTTCGTTTAGACGAGTTTTTGTTGTGTGTTTCCAAAC
RS1BA62TF RS1(AR) Raphanus sativus var. oleiformis cDNA 5', mRNA sequence.
EW716841.1:144-163
CTTCGCTTTAGGCGAATTTCAGTTTCGCGC144TGGCGAATTTTCTTTTCGTTTAGACGAGTTTTTGTTGTGTGTTTCCAAAC
RS2E711TF RS2(RS) Raphanus sativus cDNA 5', mRNA sequence.
EY940462.1:128-147
CTTCACTTTAGGCGAATTTCAGTTTCGCGC128TGGCGAATTTTCTTTTCGTTTAGACGAGTTTTTGTTGTGTGTTTCCAAAC
RR3GP95TF RR3(NY) Raphanus raphanistrum subsp. raphanistrum cDNA 5', mRNA sequence.
FD980559.1:166-185
CTTCGCTATAGGCGAATTTCAGTTTCGCGC166TGGCGAATTTTCTTTTCGTTTAGACGAGTTTTTGTTGTGTGTTTCCAAAC
Raphanus sativus mRNA, clone: RSCS03L04, 5' end sequence.
FY447126.1:113-132
CTTCACTTTAGGCGAATTTCAGTTTCGCGC113TGGCGAATTTTCTTTTCGTTTAGACGAGTTTTTGTTGTGTGTTTCCAAAC
Brassica napus genome assembly, chromosome: A07.
HG994361.1:10137894-10137913
CTTCGCTTTAGGCGATTTTCAATTTCGCGT10137894TGGCGAATTTTCTTTTCGTTTAGACGATTTTGGGGTGTTAGTTTCAATCA
Brassica napus genome assembly, chromosome: C07.
HG994371.1:19263805-19263824
CTTCGCTTTAGGCGATTCTCAATTTCGCGT19263805TGGCGAATTTTCTTTTCGTTTAGACGATTTTGGGGTGTTAGTTTCAATCA
Brassica oleracea HDEM genome, scaffold: C5.
LR031877.1:14536647-14536666
CTTAGCTTTAGGCTATTTTTAGTTTCCCAT14536647TGGCGAATTTTCTTTTCGTTTAGACGATTTTGGGATGTTAGTTTCAATCA
Raphanus sativus genome assembly, chromosome: 7.
OY743213.1:15586172-15586191
CTTCACTTTAGGCGAATTTCAGTTTCGCGC15586172TGGCGAATTTTCTTTTCGTTTAGACGAGTTTTTGTTGTGTGTTTCCAAAC
Tachina fera genome assembly, chromosome: 1.
LR999963.1:27643584-27643603
TATTTTTCATTTAAGCGCTTTTTTGATTTT27643584TGGCGAATTTTCTTTTCGTTTTTTTAATTTTGAAATTTTTTAGTTTTAGC
Stomoxys calcitrans genome assembly, chromosome: 1.
OY720435.1:124215009-124215028
TTGTTGGGAAACTAATTTAATTTTAATATA124215009TGGCGAATTTTCTTTTCGTTTCCTTATGAAATATTGTGTCGCTTGTTTTA
Stomoxys calcitrans genome assembly, chromosome: 1.
OY720435.1:133768628-133768647
TTGTTGGGAAACTCATTTAATTTCAATACA133768628TGGCGAATTTTCTTTTCGTTCTCCTTATGAAATATTGTGTCGCTCATTTT
Stomoxys calcitrans genome assembly, chromosome: 1.
OY720435.1:168063586-168063605
TCGTTGGGAAACTCATTTGATTTTAAAATA168063586TGGCGAATTTTCTTTTCGTTTTCCTTATGACATATTGTGTCGCTTGTTCT
Stomoxys calcitrans genome assembly, chromosome: 2.
OY720436.1:171151781-171151800
TTTGTGGAGAATTCATTTAATTTTTATACA171151781TGGCGAATTTTCTTTTCGTTTTCCTTATAAAATATTGTGTCGCTTGTTTC
Stomoxys calcitrans genome assembly, chromosome: 3.
OY720437.1:125960686-125960705
TTGTTGGGAAAGACATTTAATTTTAATATA125960686TGGCGAATTTTCTTTTCGTTTTCCTTATGAAACATTGTGTCGCCTGTTCT
Stomoxys calcitrans genome assembly, chromosome: 3.
OY720437.1:156680474-156680493
TTGTTGGGAAACTAATTTAATTTCAATATA156680474TGGCGAATTTTCTTTTCGTTTTTTTTCTGAAACATTGTGCCGCTTGTTCC
RR3GP95JQ RR3(NY) Raphanus raphanistrum subsp. raphanistrum cDNA 3', mRNA sequence.
FD976430.1:747-766
GTTTGGAAACACACAACAAAAACTCGTCTA747AACGAAAAGAAAATTCGCCAGCGCGAAACTGAAATT
TSA: Raphanus sativus var. sativus RNA, contig: WG3_28414.
FX667164.1:729-748
GTTTGGAAACACACAACAAAAACTCGTCTA729AACGAAAAGAAAATTCGCCAGCGCGAAACTGAAATTCGCCTAAAGTGAAG
TSA: Brassica rapa x Raphanus sativus RNA, contig: BB3_56651.
FX792917.1:716-735
GTTTGGAAACACACAACAAAAACTCGTCTA716AACGAAAAGAAAATTCGCCAGCGCGAAACTGAAATTCGCCTAAAGTGAAG
Brassica napus cultivar Xiang5A chromosome 8.
CP123883.1:19386645-19386664
TGATTGAAACTAACACCCCAAAATCGTCTA19386645AACGAAAAGAAAATTCGCCAACGCGAAATTGAAAATCGCCTAAAGCGAAG
Brassica napus cultivar Xiang5A chromosome 19.
CP123894.1:36750763-36750782
TGATTGAAACTAACACCCCAAAATCGTCTA36750763AACGAAAAGAAAATTCGCCAACGCGAAATTGAGAATCGCCTAAAGCGAAG
Raphanus sativus genome assembly, chromosome: 8.
LR778317.1:17393210-17393229
GTTTGGAAACACACAACAAAAACTCGTCTA17393210AACGAAAAGAAAATTCGCCAGCGCGAAACTGAAATTCGCCTAAAGTGAAG
Chrysoteuchia culmella genome assembly, chromosome: 5.
OU342646.1:9852020-9852039
TTTCAATCTTATATGTTTGCGATAGTAGCA9852020AACGAAAAGAAAATTCGCCATTTGAGCAGAAGGGCTGAACTTACGTCAAC
Aplidium turbinatum genome assembly, chromosome: 18.
OU964935.1:18208244-18208263
GAAAAGAAACATGTTGTAACATAACTCTAC18208244AACGAAAAGAAAATTCGCCAGCCAACGAGCTACAGTTTGATGTCAAGCCG
Anopheles cruzii genome assembly, chromosome: X.
OX030881.1:2838537-2838556
GTCCCGTACAGGGTGTAAACAATGGAGGTC2838537AACGAAAAGAAAATTCGCCACATTTTACACTTTTTGTCTGATAAGGGCGA
Euzophera pinguis genome assembly, chromosome: 1.
OX376155.1:13172507-13172526
AGCATTCTCTACCAGTCAAGCTTTGGGAGA13172507AACGAAAAGAAAATTCGCCATAAAAAAGTCAAGGAAAAATAAATATTATT
Teleiodes luculella genome assembly, chromosome: 19.
OX419601.1:5783421-5783440
TCGTTACGATTTTGAGTAACTTTTCTCGGA5783421AACGAAAAGAAAATTCGCCACTTTCATATAATATTATCATTTTAATAGGA
Stomoxys calcitrans genome assembly, chromosome: 3.
OY720437.1:118203419-118203438
AAAACAAGCGACACAAAATTTCACAAGGAA118203419AACGAAAAGAAAATTCGCCATATATTAAAATTAAATGAGTTTCAAAACAA
Stomoxys calcitrans genome assembly, chromosome: 3.
OY720437.1:134864027-134864046
AAAACAAGCGACACAATATTTCATAAGGAA134864027AACGAAAAGAAAATTCGCCATATATTAAAATTAAATGACTTTCCCTACAA
Diplosoma virens genome assembly, chromosome: 5.
OY796884.1:42041718-42041737
AACCTTAAAAAAAAATTGAAATTTTTTTTC42041718AACGAAAAGAAAATTCGCCAAAAAAGCAACTACTCGATAATACAAGTTAA

Data Export:

下記のフォーマットで最大100000件まで検索結果を取得できます。

Debug Info:

Redirect URI : https://gggenome.dbcls.jp/ja/ddbj/TGGCGAATTTTCTTTTCGTT
lang : ja | db : ddbj | k : 0 | strand : | nogap : | query_string : TGGCGAATTTTCTTTTCGTT | format : html | download : | debug : 

0.009 | 0.009 | search_start;
0.624 | 0.615 | search_plus_done; http://172.18.8.135:50400/match?q=TGGCGAATTTTCTTTTCGTT&k=0&no_gap=0&offset=0&limit=50
0.874 | 0.250 | search_minus_done; http://172.18.8.135:50400/match?q=AACGAAAAGAAAATTCGCCA&k=0&no_gap=0&offset=0&limit=33
0.883 | 0.009 | cgi_end;

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