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Database:
 

Max number of mismatches/gaps mismatches : (no more than 25% of the query length)
Search for: both strand plus strand minus strand

2025-04-05 07:16:42, GGGenome : DDBJ release 134.0 (Mar, 2024)

Summary:

Results:

Matches are highlighted with blue background. Mismatches and indels are marked in red.

Blennius ocellaris genome assembly, chromosome: 1.
OY730201.1:21133885-21133904
GCATATTACAGCCACGCTTTCAAATCCTAA21133885TGGCGTGTTCAGAGTTTTGTTCTTTGTCTTGGACAATATGAAAGACAGAA
Sequence 15969 from patent US 8030546.
GY468194.1:632-651
GCAAAATTAATGCCATGGAGAAATAGTCAC632TGGCGTGTTCAGAGTTTTGTCGGTCAACAACAAGCTATTAAAAATGGTTC
Sequence 15969 from patent US 10597667.
MO979347.1:632-651
GCAAAATTAATGCCATGGAGAAATAGTCAC632TGGCGTGTTCAGAGTTTTGTCGGTCAACAACAAGCTATTAAAAATGGTTC
GR__Eb06G01.f GR__Eb Gossypium raimondii cDNA clone GR__Eb06G01 5', mRNA sequence.
CO123880.1:552-571
GCAAAATTAATGCCATGGAGAAATAGTCAC552TGGCGTGTTCAGAGTTTTGTCGGTCAACAACAAGCTATTAAAAATGGTTC
CGF1003962_E08 Seed coat from mid-season walnut embryos collected Aug 1 Juglans regia cDNA clone WSC0010_IVF_E08 5', mRNA sequence.
CV198314.1:475-494
ACGAAGTTGATGCCGTGGAGAAATAGTCAC475TGGCGTGTTCAGAGTTTTGTTGGTCACCCGCAAACAAATGGTTCTAGTCT
G.hir-Cotyledon 1124 cDNA from Cotyledons Gossypium hirsutum cDNA, mRNA sequence.
DN780596.1:632-651
GCAAAATTAATGCCATGGAGAAATAGTCAC632TGGCGTGTTCAGAGTTTTGTCGGTCAACAACAAGCTATTAAAAATGGTTC
G.hir-Cotyledon 1816 cDNA from Cotyledons Gossypium hirsutum cDNA, mRNA sequence.
DN781288.1:632-651
GCAAAATTAATGCCATGGAGAAATAGTCAC632TGGCGTGTTCAGAGTTTTGTCGGTCAACAACAAGCTATTAAAAATGGTTC
GH_RMIRS_060_E04_F Cotton Normalized Library random primed Gossypium hirsutum cDNA, mRNA sequence.
DW486808.1:625-644
GCAAAATTAATGCCATGGAGAAATAGTCAC625TGGCGTGTTCAGAGTTTTGTCGGTCAACAACAAGCTATTAAAAATGGTTC
GH_RMIRS_061_D04_F Cotton Normalized Library random primed Gossypium hirsutum cDNA, mRNA sequence.
DW486966.1:625-644
GCAAAATTAATGCCATGGAGAAATAGTCAC625TGGCGTGTTCAGAGTTTTGTCGGTCAACAACAAGCTATTAAAAATGGTTC
GH_TMIRS_152_D11_F Cotton Normalized Library dT primed Gossypium hirsutum cDNA, mRNA sequence.
DW511348.1:197-216
GCAAAATTAATGCCATGGAGAAATAGTCAC197TGGCGTGTTCAGAGTTTTGTCGGTCAACATCGCTGTTCAGATCGATCTCG
010812AASB003092HT (AASB) Royal Gala 10 DAFB fruit Malus domestica cDNA clone AASB003092, mRNA sequence.
EB141136.1:248-267
ACAAAATTAATGCCATGGAGAAATAGTCAC248TGGCGTGTTCAGAGTTTTGTTGGAAATCCTCAGGCCATAAAGAGTGACGC
173B03 Cotton Lambda Zap Express Library Gossypium hirsutum cDNA, mRNA sequence.
EV489910.1:211-230
GCAAAATTAATGCCATGGAGAAATAGTCAC211TGGCGTGTTCAGAGTTTTGTCGGTCAACAACAAGCTATTAAAAATGGTTC
CaHRMJ47H10 CaHRMJ cDNA library Centella asiatica cDNA 5', mRNA sequence.
JK516115.1:103-122
ACAAAGTTAATGCCTTGGAGAAATAGTCAC103TGGCGTGTTCAGAGTTTTGTTGGTAACCCTCAGGCAGTAAAGAATGATGC
ndcxa0_0029_B04.ab1 Upland cotton seedling roots at 48h control (ndcxa) Gossypium hirsutum cDNA 5', mRNA sequence.
JZ370593.1:481-500
GCAAAATTAATGCCATGGAGAAATAGTCAC481TGGCGTGTTCAGAGTTTTGTCGGTCAACAACAAGCTATTAAAAATGGTTC
TSA: Pyrus x bretschneideri Unigene2854_XinShao mRNA sequence.
JR598168.1:339-358
ACCCCCTTCATGAAACAGAGAAATAGTCAC339TGGCGTGTTCAGAGTTTTGTTGGAAATCCTCAGGCCATAAAGAGTGATGC
TSA: Pyrus x bretschneideri Unigene7062_XinShao mRNA sequence.
JR602256.1:61-80
ACAAAATTAATGCCATGGAGAAATAGTCAC61TGGCGTGTTCAGAGTTTTGTTGGAAATCCTCAGGCCATAAAGAGTGATGC
Malus x domestica BHLH domain class transcription factor (BHLH21) mRNA, complete cds.
HM122457.1:675-694
ACAAAATTAATGCCATGGAGAAATAGTCAC675TGGCGTGTTCAGAGTTTTGTTGGAAATCCTCAGGCCATAAAGAGTGACGC
Strongylocentrotus purpuratus clone R3-3088B12, WORKING DRAFT SEQUENCE, 10 unordered pieces.
AC176682.1:15078-15097
TCGACGTTGAATGGGTTAATTCACTCCACT15078TGGCGTGTTCAGAGTTTTGTTACTGACATGATATTATGTTACCTATCTCT
Gossypium turneri isolate D10-2 chromosome D10_05.
CP032575.1:27300806-27300825
TTGCTTACTTTATTATAGAGAAATAGTCAC27300806TGGCGTGTTCAGAGTTTTGTCGGTCAACAACAAGCTATTAAAAATGGTTC
Gossypium herbaceum isolate Zhongcao1 chromosome 5.
CP106692.1:48703371-48703390
TTGCTTACTTTATTGTAGAGAAATAGTCAC48703371TGGCGTGTTCAGAGTTTTGTCGGTCAACAACAAGCTGTTAAAAATGGTTC
Gossypium rotundifolium isolate GPK201 chromosome 5.
CP106726.1:66158703-66158722
TTGCTTACTTTGTTATAGAGAAATAGTCAC66158703TGGCGTGTTCAGAGTTTTGTCGGTCAACAACAAGCTGTTAAAAATGGTTC
Corylus americana cultivar Rush chromosome 4.
CP125817.1:31512374-31512393
GTCGCCTACTTGAAACAGAGAAATAGTCAC31512374TGGCGTGTTCAGAGTTTTGTTGGTCACCCTCAAACCATAAAGAATGGTTC
Corylus americana cultivar Winkler chromosome 4.
CP125828.1:28599720-28599739
GTCGCCTACTTGAAACAGAGAAATAGTCAC28599720TGGCGTGTTCAGAGTTTTGTTGGTCACCCTCAAACCATAAAGAATGGTTC
Rhododendron vialii isolate Sample 1 chromosome 12b.
CP127063.1:8752518-8752537
CTACTTTTGCTTGAACAGAGAAACAGTCAC8752518TGGCGTGTTCAGAGTTTTGTTGGGCATCCTCAACCCATAACAAATGGTTC
Rhododendron vialii isolate Sample 1 chromosome 12a.
CP127076.1:9382884-9382903
CTACTTTTGCTTGAACAGAGAAACAGTCAC9382884TGGCGTGTTCAGAGTTTTGTTGGGCATCCTCAACCCATAACAAATGGTTC
Swietenia macrophylla isolate HCNGB_00002344 chromosome 8.
CP135585.1:5106076-5106095
ATTTCCTTCTTGAACCAGAGAAATAGTCAC5106076TGGCGTGTTCAGAGTTTTGTTGGTCACCCACATTCCATAAAAAATGGTTC
Malus hybrid cultivar cultivar Flame chromosome 13.
CP141922.1:3394244-3394263
ACCCCCTTCATGAAACAGAGAAACAGTCAC3394244TGGCGTGTTCAGAGTTTTGTTGGTAATCCTCAGGCCATAAAGAGTGACAC
Malus hybrid cultivar cultivar Flame chromosome 16.
CP141925.1:3398021-3398040
ACCCCCTTCATAAAACAGAGAAATAGTCAC3398021TGGCGTGTTCAGAGTTTTGTTGGAAATCCTCAGGCCATAAAGAGTGACGC
Malus hybrid cultivar cultivar Flame chromosome 13.
CP141939.1:3595130-3595149
ACCCCCTTCATGAAACAGAGAAACAGTCAC3595130TGGCGTGTTCAGAGTTTTGTTGGTAATCCTCAGGCCATAAAGAGTGACAC
Malus hybrid cultivar cultivar Flame chromosome 16.
CP141942.1:3783097-3783116
ACCCCCTTCATGAAACAGAGAAATAGTCAC3783097TGGCGTGTTCAGAGTTTTGTTGGAAATCCTCAGGCCATAAAGAGTGACGC
Malus hybrid cultivar cultivar Royalty chromosome 16.
CP141968.1:3600987-3601006
ACCCCCTTCATGAAACAGAGAAATAGTCAC3600987TGGCGTGTTCAGAGTTTTGTTGGAAATCCTCAGGCCATAAAGAGTGACGC
Malus hybrid cultivar cultivar Royalty chromosome 13.
CP141982.1:36340466-36340485
ACCCCCTTCATGAAACAGAGAAACAGTCAC36340466TGGCGTGTTCAGAGTTTTGTTGGTAATCCTCAGGCCATAAAGAGTGACAC
Malus hybrid cultivar cultivar Royalty chromosome 16.
CP141985.1:4124131-4124150
ACCCCCTTCATGAAACAGAGAAATAGTCAC4124131TGGCGTGTTCAGAGTTTTGTTGGAAATCCTCAGGCCATAAAGAGTGACGC
Malus hybrid cultivar cultivar SH6 chromosome 13.
CP143370.1:3616546-3616565
ACCCCCTTCATGAAACAGAGAAACAGTCAC3616546TGGCGTGTTCAGAGTTTTGTTGGTAATCCTCAGGCCATAAAGAGTGACAC
Malus hybrid cultivar cultivar SH6 chromosome 16.
CP143373.1:3878078-3878097
ACCCCCTTCATGAAACAGAGAAATAGTCAC3878078TGGCGTGTTCAGAGTTTTGTTGGAAATCCTCAGGCCATAAAGAGTGACGC
Malus hybrid cultivar cultivar SH6 chromosome 13.
CP143387.1:3538149-3538168
ACCCCCTTCATGAAACAGAGAAACAGTCAC3538149TGGCGTGTTCAGAGTTTTGTTGGTAATCCTCAGGCCATAAAGAGTGACAC
Malus hybrid cultivar cultivar SH6 chromosome 16.
CP143390.1:3438705-3438724
ACCCCCTGCATGAAACAGAGAAATAGTCAC3438705TGGCGTGTTCAGAGTTTTGTTGGAAATCCTCAGGCCATAAAGAGTGATGC
Corylus avellana genome assembly, chromosome: ca4.
LR899426.1:30918967-30918986
GTCGCCTACTTGAAACAGAGAAATAGTCAC30918967TGGCGTGTTCAGAGTTTTGTTGGTCACCCTCAAACCATAAAGAATGGTTC
Rosa persica clone Rbe021951 basic helix-loop-helix family protein mRNA, complete cds.
OQ545053.1:373-392
ACAAAGTTAATGCCATGGAGAAATAGCCAC373TGGCGTGTTCAGAGTTTTGTTGGTCATCCTCAGCCGATAAAGAATGATAC
Malus sylvestris genome assembly, chromosome: 13.
OU696515.1:3566915-3566934
ACCCCCTTCATGAAACAGAGAAACAGTCAC3566915TGGCGTGTTCAGAGTTTTGTTGGTAATCCTCAGGCCATAAAGAGTGACAC
Malus sylvestris genome assembly, chromosome: 16.
OU696518.1:3602377-3602396
ACCCCCTTCATGAAACAGAGAAATAGTCAC3602377TGGCGTGTTCAGAGTTTTGTTGGAAATCCTCAGGCCATAAAGAGTGACGC
Malus domestica genome assembly, chromosome: 13.
OU696689.1:3658198-3658217
ACCCCCTTCATGAAACAGAGAAACAGTCAC3658198TGGCGTGTTCAGAGTTTTGTTGGTAATCCTCAGGCCATAAAGAGTGACAC
Malus domestica genome assembly, chromosome: 16.
OU696692.1:3897349-3897368
ACCCCCTTCATGAAACAGAGAAATAGTCAC3897349TGGCGTGTTCAGAGTTTTGTTGGAAATCCTCAGGCCATAAAGAGTGACGC
Malus domestica genome assembly, chromosome: 13.
OU744554.1:3614985-3615004
ACCCCCTTCATGAAACAGAGAAACAGTCAC3614985TGGCGTGTTCAGAGTTTTGTTGGTAATCCTCAGGCCATAAAGAGTGACAC
Malus domestica genome assembly, chromosome: 16.
OU744557.1:3900361-3900380
ACCCCCTTCATGAAACAGAGAAATAGTCAC3900361TGGCGTGTTCAGAGTTTTGTTGGAAATCCTCAGGCCATAAAGAGTGACGC
Malus domestica genome assembly, chromosome: 13.
OU744965.1:3594996-3595015
ACCCCCTTCATGAAACAGAGAAACAGTCAC3594996TGGCGTGTTCAGAGTTTTGTTGGTAATCCTCAGGCCATAAAGAGTGACAC
Malus domestica genome assembly, chromosome: 16.
OU744968.1:3865159-3865178
ACCCCCTTCATGAAACAGAGAAATAGTCAC3865159TGGCGTGTTCAGAGTTTTGTTGGAAATCCTCAGGCCATAAAGAGTGACGC
Malus domestica genome assembly, chromosome: 13.
OU745003.1:3498213-3498232
ACCCCCTTCATGAAACAGAGAAACAGTCAC3498213TGGCGTGTTCAGAGTTTTGTTGGTAATCCTCAGGCCATAAAGAGTGACAC
Malus domestica genome assembly, chromosome: 16.
OU745006.1:3902069-3902088
ACCCCCTTCATGAAACAGAGAAATAGTCAC3902069TGGCGTGTTCAGAGTTTTGTTGGAAATCCTCAGGCCATAAAGAGTGACGC
Potentilla anserina genome assembly, chromosome: 4.
OW176984.1:23700309-23700328
CTCATTCCTTTTTAACAGAGGAATAGCCAC23700309TGGCGTGTTCAGAGTTTTGTTGGTCAACCTCAGCCGATAAAGAATGATAC
Geum urbanum genome assembly, chromosome: 7.
OX327003.1:53671659-53671678
ATATGGTGTGTGAAACAGAGAAATAGCCAC53671659TGGCGTGTTCAGAGTTTTGTTGGTAATCCTCAAGCGATAAAGAACGATCC
Geum urbanum genome assembly, chromosome: 9.
OX327005.1:51358765-51358784
ATATGGTCTGTGAAACAGAGAAATAGCCAC51358765TGGCGTGTTCAGAGTTTTGTTGGTAATCCTCAGGCGATAAAGAGCGATCC
Geum urbanum genome assembly, chromosome: 16.
OX327012.1:42218055-42218074
ATATGGTGTGTGAAACAGAGAAATAGTCAC42218055TGGCGTGTTCAGAGTTTTGTTGGTAATCCTCAAGCTATAAAGAACGATCC
Ailanthus altissima genome assembly, chromosome: 3.
OX327685.1:21164820-21164839
CTCTCCTTCTTGAAACAGAGAAATAGTCAC21164820TGGCGTGTTCAGAGTTTTGTCGGTCTCCCGCATGCAATGAAAAATGGTTC
Ailanthus altissima genome assembly, chromosome: 10.
OX327692.1:19918080-19918099
AACTCTCCTTTGAAACAGAGAAATAGTCAC19918080TGGCGTGTTCAGAGTTTTGTTGGTCACCCGCATGCGATGAAAAATGGTTC
Hedera helix genome assembly, chromosome: 16.
OX359279.1:42221672-42221691
CAATTTGCTTGTAATCAGAGAAATAGTCAC42221672TGGCGTGTTCAGAGTTTTGTGGGTAATCCTCAGGCTGTAAAGAATGACTC
Hedera helix genome assembly, chromosome: 18.
OX359281.1:40791994-40792013
CAATTTGCTTGTAATCAGAGAAATAGTCAC40791994TGGCGTGTTCAGAGTTTTGTGGGTAATCCTCAGGCTGTAAAGAATGACTC
Hibiscus tridactylites genome assembly, chromosome: 17.
OY288281.1:76079444-76079463
TTTTCCTTACTCGAATAGAGAAATAGTCAC76079444TGGCGTGTTCAGAGTTTTGTTGGTCACGCACAAGATATTAAAAACGGTTG
Malus x robusta genome assembly, chromosome: 3.
OY720327.1:4229881-4229900
ACCCCCTTCATGAAACAGAGAAATAGTCAC4229881TGGCGTGTTCAGAGTTTTGTTGGAAATCCTCAGGCCATAAAGAGTGACGC
Malus x robusta genome assembly, chromosome: 9.
OY720333.1:3567876-3567895
ACCCCCTTCATGAAACAGAGAAACAGTCAC3567876TGGCGTGTTCAGAGTTTTGTTGGTAATCCTCAGGCCATAAAGAGTGACAC
Crataegus laevigata genome assembly, chromosome: 3.
OY756940.1:3804564-3804583
ACCCCCTTCATGAAACTGAGAAACAGTCAC3804564TGGCGTGTTCAGAGTTTTGTTGGTAATCCTCACCATTTCCTGGGCAGTTT
Crataegus laevigata genome assembly, chromosome: 3.
OY756940.1:3846050-3846069
ACCCCCTTCACGAAACAGAGAAACAGTCAC3846050TGGCGTGTTCAGAGTTTTGTTGGTAATCCTCAGGCCATAAAGAGTGACAC
Crataegus laevigata genome assembly, chromosome: 11.
OY756948.1:3871027-3871046
TTACCCTTCATGAAACAGAGAAATAGTCAC3871027TGGCGTGTTCAGAGTTTTGTTGGAAATCCTCAGGCCATAAAGAGTGACGC
Pyrus communis genome assembly, chromosome: 4.
OY757071.1:3161269-3161288
ACCCCCTTCATGAAACAGAGAAATAGTCAC3161269TGGCGTGTTCAGAGTTTTGTTGGAAATCCTCAGGCCATAAAGAGCGACGC
Potentilla sterilis genome assembly, chromosome: 8.
OY821761.1:46190404-46190423
CTTATACCCTGCTAACAGAGAAATAGCCAC46190404TGGCGTGTTCAGAGTTTTGTTGGTCATCCTCAGCCGATAAAGAATGATAT
Cornus suecica genome assembly, chromosome: 5.
OY998242.1:23231219-23231238
TTCTTTTCCTTGATACAGAGAAACAATCAT23231219TGGCGTGTTCAGAGTTTTGTTGGTCAACCTCAAGCCATAAAGAATGGTTC

Data Export:

Maximum 100000 results can be retrieved in various formats shown below:

Debug Info:

Redirect URI : https://gggenome.dbcls.jp/en/ddbj/TGGCGTGTTCAGAGTTTTGT
lang : en | db : ddbj | k : 0 | strand : | nogap : | query_string : TGGCGTGTTCAGAGTTTTGT | format : html | download : | debug : 

0.008 | 0.008 | search_start;
0.710 | 0.702 | search_plus_done; http://172.18.8.135:50400/match?q=TGGCGTGTTCAGAGTTTTGT&k=0&no_gap=0&offset=0&limit=50
0.771 | 0.061 | search_minus_done; http://172.18.8.135:50400/match?q=ACAAAACTCTGAACACGCCA&k=0&no_gap=0&offset=0&limit=0
0.771 | 0.000 | cgi_end;

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