GGGenome | Results

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2025-04-10 01:55:07, GGGenome : DDBJ release 134.0 (Mar, 2024)

Summary:

Results:

Matches are highlighted with blue background. Mismatches and in~~dels~~ are marked in red.

Cervus elaphus genome assembly, chromosome: 20.
OU343097.1:50506271-50506290

CTTCTTAATGGTCCAAGAGACTGCTGAGGT50506271TGGCTGAGAGTGAAAGTGAAGTCGCTCAGTCGTGTCCAACTCTTTGTGAC

Denticeps clupeoides genome assembly, chromosome: 1.
LR535813.1:1457138-1457157

TGAAGATAGTGATGATCTGTCCATCTTGTC1457138TGGCTGAGAGTGAAAGTGAAGTGATTGTCATTGTGAAACACTGCAGTACA

Mobula hypostoma genome assembly, chromosome: 3.
OY992594.1:99636838-99636857

TCAAGCATTCAGGCTTGGAGATGCCAGAAG99636838TGGCTGAGAGTGAAAGTGAAATGGTTTCTCTACTTCAGCAGTTTAGAAAC

TSA: Cannabis sativa PK08128.1_1.CasaPuKu mRNA sequence.
JP449761.1:804-823

AGAATGAAGAAAATGAGGATGATGATTGGA804TGGCTGAGAGTGAAAGTGAAGATGATAATGACATTGTCGTTTCTAATGTG

Arctium minus genome assembly, chromosome: 9.
OX941088.1:50045788-50045807

CTCAGAAGAAGAAGAAGAAGAAGGTGTTAG50045788TGGCTGAGAGTGAAAGTGAAGAAAGCTCAGAGGAGGAGATTGATATGGCT

2_Tsi_b3v08.
OC000980.1:106606-106625

ACAACAGTTTGGAATGTTATGATTATTATT106606TGGCTGAGAGTGAAAGTGAACAGAAAGCTAGTGAAAATGATTTTCTTTTT

1_Tps_b3v08.
OD106384.1:380-399

ATAACAGTTTGGAATGTTATGATTATTATT380TGGCTGAGAGTGAAAGTGAACAGAAAGCGAGAGAAAATGATTTTATTTTT

4_Tbi_b3v08.
OD606967.1:691-710

TTCTGCTTCATGCAGATGATGTCTTATTAA691TGGCTGAGAGTGAAAGTGAATAATTGCAGAATGCAATAAATTGTTTGAAT

4_Tte_b3v08.
OE000406.1:106738-106757

TGCTGCTATATGCAGATGATGCCATATTAA106738TGGCTGAGAGTGAAAGTGAAAGTGACTTGCAGAATGCATTAAATCGTTTG

4_Tte_b3v08.
OE001973.1:141391-141410

TCCTGCTTCATGCAGATGATGTCTTATTAA141391TGGCTGAGAGTGAAAGTGAATAATTGCAGAATGCAATAAATTGTTTGAAT

5_Tge_b3v08.
OE839211.1:104877-104896

TGCTGCTATATGCAGATGATGTCATATTAA104877TGGCTGAGAGTGAAAGTGAAAGTGACTTGCAGAATGCATTAAATCGTTGG

Oscheius sp. JU1382 genome assembly, chromosome: I.
OW051475.1:2705215-2705234

GAAGCGATCCTTGGTTATCGACTTTGTCCA2705215TGGCTGAGAGTGAAAGTGAAAAGGGCGGCTCTTTCTTTTGGCGCGTAAAA

Athripsodes cinereus genome assembly, chromosome: 21.
OX388325.1:16152696-16152715

CATTGATGTACGCAGATGATTTGGTGTTAA16152696TGGCTGAGAGTGAAAGTGAACTTACAAGAGATTGTTACGTGTGTGTATGA

Pyrrhosoma nymphula genome assembly, chromosome: 2.
OY754328.1:24279907-24279926

AGACTGGGATTTTTCAAAGGTAAGTCCTCG24279907TGGCTGAGAGTGAAAGTGAATTTTATTTTGCCTTATTCGGGGTCCTATCT

Denticeps clupeoides genome assembly, chromosome: 1.
LR535813.1:1420728-1420747

TGTACTGCAGTGTTTCACAATGACAATCAC1420728TTCACTTTCACTCTCAGCCAGACAAGATGGACAGATCATCACTATCTTCA

Arctium minus genome assembly, chromosome: 12.
OX941091.1:40727413-40727432

AGCCATATCGATCTCCTCCTCTGATCTTTC40727413TTCACTTTCACTCTCAGCCACCAATACTTTCTTCTTCTTATTCTTCTTCT

1_Tdi_b3v08.
OA620825.1:470-489

AAAAATAAAATCATTTTCTCTCGCTTTCTG470TTCACTTTCACTCTCAGCCAAATAATAATCATAACATTCCAAACTGTTAT

4_Tbi_b3v08.
OD564399.1:175429-175448

CAAACGATTTAATGCATTCTGCAAGTCACT175429TTCACTTTCACTCTCAGCCATTAATATGGCATCATCTGCATATAGCAGCA

4_Tte_b3v08.
OE009604.1:15102-15121

CCACATTCAAACACTTAATACATTCTTAAA15102TTCACTTTCACTCTCAGCCATTATTACGGCATCATCTGCATATCAAACTA

2_Tcm_b3v08.
OE257619.1:383-402

AAAAAGAAAATCATTTTCACTAGCTTTCTG383TTCACTTTCACTCTCAGCCAAATAATAATCATAACATTCCAAACTGTTGT

Selenia dentaria genome assembly, chromosome: 2.
OU862877.1:42481724-42481743

TACTCATCCGTCTCATCTTCAAATTAATAC42481724TTCACTTTCACTCTCAGCCAGCCGACGCTCAATTAAATCTAAGATTCCTT

Athripsodes cinereus genome assembly, chromosome: 8.
OX388312.1:28195602-28195621

ATTCATTTTCATCCCATTCATACTGCAACT28195602TTCACTTTCACTCTCAGCCATTAATTTTATGTATGTGAGTAATAATATGA

Data Export:

Maximum 100000 results can be retrieved in various formats shown below:

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You can copy-paste the result into spreadsheet softwares (e.g. Excel) or text editors.
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BED format: Link | Download
GFF format: Link | Download
JSON format: Link | Download

Debug Info:

0.008 | 0.008 | search_start;
0.188 | 0.179 | search_plus_done; http://172.18.8.135:50400/match?q=TGGCTGAGAGTGAAAGTGAA&k=0&no_gap=0&offset=0&limit=50
0.278 | 0.090 | search_minus_done; http://172.18.8.135:50400/match?q=TTCACTTTCACTCTCAGCCA&k=0&no_gap=0&offset=0&limit=36
0.283 | 0.005 | cgi_end;

GGGenome by @meso_cacase at DBCLS
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