GGGenome Help | Japanese

Database:
 

Max number of mismatches/gaps mismatches : (no more than 25% of the query length)
Search for: both strand plus strand minus strand

2025-12-17 07:26:18, GGGenome : DDBJ release 138.0 (Jun, 2025)

Summary:

Results:

Matches are highlighted with blue background. Mismatches and indels are marked in red.

Pyricularia oryzae isolate EA18 chromosome 5.
CP091462.1:2261631-2261650
TGAAGAAAAAGACAAATAAAAAGGAAGGAG2261631TGGCTTTATGTGATGACCCAAAGGTTAACCATAATTGTGTAGGGAATAAT
Pyricularia oryzae P131 chromosome V.
CP114139.1:2250390-2250409
TGAAGAAAAAGACAAATAAAAAGGAAGGAG2250390TGGCTTTATGTGATGACCCAAAGGTTAACCATAATTGTGTAGGGAATAAT
Brassica napus cultivar Xiang5A chromosome 19.
CP151914.1:3986889-3986908
TTGACCATCTCATCTCATTTTCCAAGAAAG3986889TGGCTTTATGTGATGACCCACACATGACTCATCCTTTACAACAAAGGTCT
Brassica napus genome assembly, chromosome: C09.
HG994373.1:4598603-4598622
TTGACCATCTCATCTCATTTTCCAAGAAAG4598603TGGCTTTATGTGATGACCCACACATGACTCATCCTTTACAACAAAGGTCT
Brassica oleracea HDEM genome, scaffold: C9.
LR031875.1:4773952-4773971
TTGACCATCTCATCTCATTCTCCAAGAAAG4773952TGGCTTTATGTGATGACCCATACATGACTCATCCTTTACAACAAAGGTCT
Solanum nigrum genome assembly, chromosome: 27.
OZ176038.1:3119168-3119187
AGAAATAACTTGGGGCCTCTGATTTATATT3119168TGGCTTTATGTGATGACCCACCATATCATCCGGCCACATAGGCGCCACGT
Brassica napus cultivar Xiang5A chromosome 16.
CP123891.1:64564319-64564338
AGACCTTTGTTGTAAAGGATGAGTCATGTG64564319TGGGTCATCACATAAAGCCACTTTCTTGGAAAATGAGATGAGATGGTCAA

Data Export:

Maximum 100000 results can be retrieved in various formats shown below:

Debug Info:

Redirect URI : https://gggenome.dbcls.jp/en/ddbj/TGGCTTTATGTGATGACCCA
lang : en | db : ddbj | k : 0 | strand : | nogap : | query_string : TGGCTTTATGTGATGACCCA | format : html | download : | debug : 

0.009 | 0.009 | search_start;
0.105 | 0.097 | search_plus_done; http://172.18.8.135:50800/match?q=TGGCTTTATGTGATGACCCA&k=0&no_gap=0&offset=0&limit=50
0.125 | 0.020 | search_minus_done; http://172.18.8.135:50800/match?q=TGGGTCATCACATAAAGCCA&k=0&no_gap=0&offset=0&limit=44
0.126 | 0.001 | cgi_end;

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