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ミスマッチ/ギャップを許容 ミスマッチのみ許容 : 塩基まで (検索する配列長の25%まで)
双方向を検索 +方向のみ検索 -方向のみ検索

2025-03-14 18:15:17, GGGenome : DDBJ release 134.0 (Mar, 2024)

Summary:

Results:

検索語に色がつきます(ミスマッチ挿入欠失

RS2DH73TF RS2(RS) Raphanus sativus cDNA 5', mRNA sequence.
EY938250.1:3-22
GG3TGGGAAAGATGTTCCTCGTGGATATTACATGTTTTGCCGTGGTAGCAGGA
LR_DPPb_11G09_M13R LR_DPPb Lumbricus rubellus cDNA clone LR_DPPb_11G09 5', mRNA sequence.
EH167128.1:2-21
G2CACGAGGAACATCTTTCCCAGCGGACGTGAAATCTTCGCCGCGATCAACG
TSA: Raphanus sativus var. sativus RNA, contig: WG3_9400.
FX667890.1:833-852
TCCTGCTACCACGGCAAAACATGTAATATC833CACGAGGAACATCTTTCCCACAAATAGGGAAGCTTCCGAGGGTATCTTTC
TSA: Brassica rapa x Raphanus sativus RNA, contig: BB3_7185.
FX735065.1:846-865
TCCTGCTACCACGGCAAAACATGTAATATC846CACGAGGAACATCTTTCCCACAAATAGGGAAGCTTCCGAGGGTATCTTTC
TSA: Raphanus sativus RS07950 mRNA sequence.
JT792497.1:977-996
TCCTGCTACCACGGCAAAACATGTAATATC977CACGAGGAACATCTTTCCCACAAATAGGGAAGCTTCCGAGGGTATCTTTC
TSA: Raphanus sativus RS07951 mRNA sequence.
JT792498.1:890-909
TCCTGCTACCACGGCAAAACATGTAATATC890CACGAGGAACATCTTTCCCACAAATAGGGAAGCTTCCGAGGGTATCTTTC
Raphanus sativus genome assembly, chromosome: 1.
LR778310.1:17327212-17327231
GGACAAACAAGCAAACACTCACGTAATATC17327212CACGAGGAACATCTTTCCCACAAATAGGGAAGCTTCCAAGTGTATCTTTC
Raphanus sativus genome assembly, chromosome: 6.
OY743212.1:17327212-17327231
GGACAAACAAGCAAACACTCACGTAATATC17327212CACGAGGAACATCTTTCCCACAAATAGGGAAGCTTCCAAGTGTATCTTTC
Andrena marginata genome assembly, chromosome: 3.
OZ010661.1:8913601-8913620
CGCGTCCTCGAGGACTTTCAGTTTATAAAT8913601CACGAGGAACATCTTTCCCACGCGCGCGATCTTTGTGGAGACAGTTTAGC

Data Export:

下記のフォーマットで最大100000件まで検索結果を取得できます。

Debug Info:

Redirect URI : https://gggenome.dbcls.jp/ja/ddbj/TGGGAAAGATGTTCCTCGTG
lang : ja | db : ddbj | k : 0 | strand : | nogap : | query_string : TGGGAAAGATGTTCCTCGTG | format : html | download : | debug :

0.009 | 0.009 | search_start;
0.393 | 0.384 | search_plus_done; http://172.18.8.135:50400/match?q=TGGGAAAGATGTTCCTCGTG&k=0&no_gap=0&offset=0&limit=50
0.603 | 0.211 | search_minus_done; http://172.18.8.135:50400/match?q=CACGAGGAACATCTTTCCCA&k=0&no_gap=0&offset=0&limit=49
0.609 | 0.005 | cgi_end;

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