GGGenome Help | Japanese

Database:
 

Max number of mismatches/gaps mismatches : (no more than 25% of the query length)
Search for: both strand plus strand minus strand

2025-03-14 22:45:18, GGGenome : DDBJ release 134.0 (Mar, 2024)

Summary:

Results:

Matches are highlighted with blue background. Mismatches and indels are marked in red.

RS2EE44TF RS2(RS) Raphanus sativus cDNA 5', mRNA sequence.
EY941106.1:116-137
GGTGCTTCCAAGAATCTAAACTTGATGGAG116TGGGACAAGCTCTGGACTATCAACAAGAAGATAGTTGATCCTGTGTGTCCTA
Dn(5+10)d_1_1803 Dendrobium nobile (5+10)d-vernalized cDNA library Dendrobium nobile cDNA 5', mRNA sequence.
HO194477.1:250-271
GGTGCTTCCAAGAATATAAACCTTATGGAG250TGGGACAAGCTCTGGACTATCAATAAAAAAATCATTGATCCCATTTGTCCAA
TSA: Raphanus sativus var. sativus RNA, contig: WG3_12167.
FX666464.1:1636-1657
GGTGCTTCCAAGAATCTAAACTTGATGGAG1636TGGGACAAGCTCTGGACTATCAACAAGAAGATAGTTGATCCTGTGTGTCCTA
TSA: Oncidium Gower Ramsey contig35266.OnGoRa mRNA sequence.
JL925816.1:1139-1160
GGGTGCTTCCAAAAACATAAACCTTATGGA1139TGGGACAAGCTCTGGACTATCAATAAAAAAATCATTGATCCCATTTGTCCGA
Apostasia odorata MADS30 (MADS30) gene, complete cds.
KP241100.1:9966-9987
GGTGCTTCCAAAAACATAAACCTTATGGAG9966TGGGACAAGCTCTGGACTATCAACAAAAAGATTATTGATCCCATTTGTCCGA
Raphanus sativus genome assembly, chromosome: 1.
LR778310.1:12938511-12938532
GGTGCTTCCAAGAATCTAAACTTGATGGAG12938511TGGGACAAGCTCTGGACTATCAACAAGAAGATAGTTGATCCTGTGTGTCCTA
Raphanus sativus genome assembly, chromosome: 6.
OY743212.1:12938511-12938532
GGTGCTTCCAAGAATCTAAACTTGATGGAG12938511TGGGACAAGCTCTGGACTATCAACAAGAAGATAGTTGATCCTGTGTGTCCTA
Raphanus sativus mRNA, clone: RSCR19M03, 5' end sequence.
FY445810.1:770-791
TAGGACACACAGGATCAACTATCTTCTTGT770TGATAGTCCAGAGCTTGTCCCACTCCATCAAGTTTAGATTCTTGGGAGCACC
TSA: Brassica rapa x Raphanus sativus RNA, contig: BB3_19210.
FX728957.1:725-746
TAGGACACACAGGATCAACTATCTTCTTGT725TGATAGTCCAGAGCTTGTCCCACTCCATCAAGTTTAGATTCTTGGAAGCACC
TSA: Raphanus sativus RS22987 mRNA sequence.
JT807534.1:678-699
TAGGACACACAGGATCAACTATCTTCTTGT678TGATAGTCCAGAGCTTGTCCCACTCCATCAAGTTTAGATTCTTGGAAGCACC

Data Export:

Maximum 100000 results can be retrieved in various formats shown below:

Debug Info:

Redirect URI : https://gggenome.dbcls.jp/en/ddbj/TGGGACAAGCTCTGGACTATCA
lang : en | db : ddbj | k : 0 | strand : | nogap : | query_string : TGGGACAAGCTCTGGACTATCA | format : html | download : | debug : 

0.008 | 0.008 | search_start;
0.365 | 0.357 | search_plus_done; http://172.18.8.135:50400/match?q=TGGGACAAGCTCTGGACTATCA&k=0&no_gap=0&offset=0&limit=50
0.489 | 0.124 | search_minus_done; http://172.18.8.135:50400/match?q=TGATAGTCCAGAGCTTGTCCCA&k=0&no_gap=0&offset=0&limit=43
0.491 | 0.002 | cgi_end;

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