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ミスマッチ/ギャップを許容 ミスマッチのみ許容 ： 塩基まで (検索する配列長の25%まで)
双方向を検索 ＋方向のみ検索 －方向のみ検索

2025-04-06 14:14:24, GGGenome : DDBJ release 134.0 (Mar, 2024)

Summary:

Results:

検索語に色がつきます（ミスマッチ・挿入欠失）。

Heterocephalus glaber genome assembly, chromosome: 8.
OX090916.1:67472459-67472478
GGATACTTTCTTTTTTCATTTTCCATGGAA67472459TGGGATGGAGGAAATTATGGCTGGCAATAATTTGAACACAGTGGGTATTG
Heterocephalus glaber genome assembly, chromosome: 8.
OX090948.1:60407690-60407709
GGATACTTTCTTTTTTCATTTTCCATGGAA60407690TGGGATGGAGGAAATTATGGCTGGCAATAATTTGAACACAGTGGGTATTG
Heterocephalus glaber genome assembly, chromosome: 6.
OZ001071.1:40711365-40711384
GGATACTTTCTTTTTTCATTTTCCATGGAA40711365TGGGATGGAGGAAATTATGGCTGGCAATAATTTGAACACAGTGGGTATTG
Heterocephalus glaber genome assembly, chromosome: 6.
OZ001114.1:40251559-40251578
GGATACTTTCTTTTTTCATTTTCCATGGAA40251559TGGGATGGAGGAAATTATGGCTGGCAATAATTTGAACACAGTGGGTATTG
Sarcophilus harrisii genome assembly, chromosome: 3.
LR735556.1:546620795-546620814
TAATGTGGGGGTACTTTGGTGATTCTGAGC546620795TGGGATGGAGGAAATTATGGGAAGTACCAGAGTGGAGGAGGTGGTAATAG
Pig DNA sequence *** SEQUENCING IN PROGRESS *** from clone CH242-5D21.
FP565743.1:139327-139346
TCTTCATAATATAAAGATCTTCATTTTTAA139327TGGGATGGAGGAAATTATGGCTGTTTTTCTGAAACCACATCAATTTTCAA
Avena insularis genome assembly, chromosome: 3C.
OU342340.1:250434617-250434636
GTCAAAAGAAGAACATGAGCTCATATTATT250434617TGGGATGGAGGAAATTATGGATAGAACCAAAGAAAGGTGGTGGAGTTTGG
Avena insularis genome assembly, chromosome: 7C.
OU342344.1:415777982-415778001
GTCAAAAGAAGAACATGGGCTCATATTATT415777982TGGGATGGAGGAAATTATGGATAGAACCAAAGAAAGGTGGTGGAGTTTGG
Avena insularis genome assembly, chromosome: 7C.
OU342344.1:415787835-415787854
GTCAAAAGAAGAACATGGGCTGATATTATT415787835TGGGATGGAGGAAATTATGGATAGAACCAAAGAAAGGTGGTGGAGTTTGG
Avena sativa genome assembly, chromosome: 3C.
OU342387.1:259962193-259962212
GTCAAAAGAAGAATATGAGCTCATATTATT259962193TGGGATGGAGGAAATTATGGATAGAACCAAAGAAAGATGGTGGAGTTTGG
Avena sativa genome assembly, chromosome: 10.
OV702288.1:291490066-291490085
GTCAAAAGAAGAATATGAGCTCATATTATT291490066TGGGATGGAGGAAATTATGGATAGAACCAAAGAAAGATGGTGGAGTTTGG
Sus scrofa scrofa breed NS chromosome 5.
CP071556.1:58098984-58099003
TTGAAAATTGATGTGGTTTCAGAAAAACAG58098984CCATAATTTCCTCCATCCCATTAAAAATGAAGATCTTTATATTATGAAGA
Sus scrofa genome assembly, chromosome: 5.
OY997212.1:61474225-61474244
TTGAAAATTGATGTGGTTTCAGAAAAACAG61474225CCATAATTTCCTCCATCCCATTAAAAATGAAGATCTTTATATTATGAAGA
Mobula hypostoma genome assembly, chromosome: 11.
OY992602.1:8767465-8767484
TTTTTGCTTCACTGGGTTCCTCAAGGAAAA8767465CCATAATTTCCTCCATCCCAGATGTCAAACTTAGAAACGATCTCCTGGGG
Sus scrofa genomic clone CH242-188K11, genomic survey sequence.
CT276555.1:505-524
TTGAAAATTGATGTGGTTTCAGAAAAACAG505CCATAATTTCCTCCATCCCATTAAAAATGAAGATCTTTATATTATGAAGA
Pig DNA sequence *** SEQUENCING IN PROGRESS *** from clone CH242-248E1.
FP089491.3:161841-161860
TTGAAAATTGATGTGGTTTCAGAAAAACAG161841CCATAATTTCCTCCATCCCATTAAAAATGAAGATCTTTATATTATGAAGA
Daucus carota subsp. sativus cultivar DH1 chromosome 7.
CP093349.1:39349078-39349097
CAATCATTTGTATGGTGATAGATCAGGACC39349078CCATAATTTCCTCCATCCCAAACCTACTTTCTTTCCAAAATTGAATTATA
Daucus carota isolate Kuroda chromosome 7.
CP125307.1:39427984-39428003
CAATCATTTGTATGGTGATAGATCAGGACC39427984CCATAATTTCCTCCATCCCAAACCTACTTTCTTTCCAAAATTGAATTATA

Data Export:

下記のフォーマットで最大100000件まで検索結果を取得できます。

Debug Info:

Redirect URI : https://gggenome.dbcls.jp/ja/ddbj/TGGGATGGAGGAAATTATGG
lang : ja | db : ddbj | k : 0 | strand : | nogap : | query_string : TGGGATGGAGGAAATTATGG | format : html | download : | debug : 

0.009 | 0.009 | search_start;
0.344 | 0.335 | search_plus_done; http://172.18.8.135:50400/match?q=TGGGATGGAGGAAATTATGG&k=0&no_gap=0&offset=0&limit=50
0.472 | 0.128 | search_minus_done; http://172.18.8.135:50400/match?q=CCATAATTTCCTCCATCCCA&k=0&no_gap=0&offset=0&limit=39
0.477 | 0.005 | cgi_end;

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