GGGenome Help | Japanese

Database:
 

Max number of mismatches/gaps mismatches : (no more than 25% of the query length)
Search for: both strand plus strand minus strand

2025-12-18 13:45:10, GGGenome : DDBJ release 138.0 (Jun, 2025)

Summary:

Results:

Matches are highlighted with blue background. Mismatches and indels are marked in red.

WO 2016010068-A/4: Method for identification and breeding of clubroot resistant broccoli.
HZ474177.1:6-26
ACCTN6TGGGTAAGTAACTGTGGTGGCCTCTCTCTCTCTCTCTCTCTCTCTCTCTCT
WO 2016010068-A/13: Method for identification and breeding of clubroot resistant broccoli.
HZ474186.1:1-21
1TGGGTAAGTAACTGTGGTGGC
JP 2016021907-A/4: The method for identification of clubroot resistance in Brassica plants.
HZ489468.1:6-26
ACCTN6TGGGTAAGTAACTGTGGTGGCCTCTCTCTCTCTCTCTCTCTCTCTCTCTCT
JP 2016021907-A/13: The method for identification of clubroot resistance in Brassica plants.
HZ489477.1:1-21
1TGGGTAAGTAACTGTGGTGGC
Sequence 121 from Patent WO2012088289.
JA817784.1:6-26
ACCTN6TGGGTAAGTAACTGTGGTGGCCTCTCTCTCTCTCTCTCTCTCTCTCTCTCT
Sequence 366 from Patent WO2012088289.
JA818029.1:1-21
1TGGGTAAGTAACTGTGGTGGC
Sequence 121 from patent US 9702013.
KH919311.1:6-26
ACCTN6TGGGTAAGTAACTGTGGTGGCCTCTCTCTCTCTCTCTCTCTCTCTCTCTCT
Sequence 366 from patent US 9702013.
KH919556.1:1-21
1TGGGTAAGTAACTGTGGTGGC
Sequence 121 from patent US 10590490.
MO959588.1:6-26
ACCTN6TGGGTAAGTAACTGTGGTGGCCTCTCTCTCTCTCTCTCTCTCTCTCTCTCT
Sequence 366 from patent US 10590490.
MO959833.1:1-21
1TGGGTAAGTAACTGTGGTGGC
Brassica napus cultivar Xiang5A chromosome 5.
CP123880.1:5413727-5413747
TTTTATAACTACTAGAGTTATGGGTACCTT5413727TGGGTAAGTAACTGTGGTGGCCTCTCTCTCTCTCTCAATACACTTTTCACT
Brassica napus cultivar Xiang5A chromosome 10.
CP151905.1:21301162-21301182
AGTGAAAAGTGTATTGAGAGAGAGAGAGAG21301162GCCACCACAGTTACTTACCCAAAGGTACCCATAACTCTAGTAGTTATAAAA
Brassica napus genome assembly, chromosome: A10.
HG994364.1:15342833-15342853
AGTGAAAAGTGTATTGAGAGAGAGAGAGAG15342833GCCACCACAGTTACTTACCCAAAGGTACCCATAACTCTAGTAGTTATAAAA
Brassica oleracea HDEM genome, scaffold: C9.
LR031875.1:54126515-54126535
AGAGAGAGAGAGAGAGAGAGAGAGAGAGAG54126515GCCACCACAGTTACTTACCCAAAGGTACCCATAACTCTAGTAGTTATAAAA
Anilocra frontalis genome assembly, chromosome: 7.
OZ209261.1:730355416-730355436
GCCAAACATGAAGTGATCGAATGGTTTTAA730355416GCCACCACAGTTACTTACCCACAATACCCTTTGACTCTAGCCTGTCAGCAT

Data Export:

Maximum 100000 results can be retrieved in various formats shown below:

Debug Info:

Redirect URI : https://gggenome.dbcls.jp/en/ddbj/TGGGTAAGTAACTGTGGTGGC
lang : en | db : ddbj | k : 0 | strand : | nogap : | query_string : TGGGTAAGTAACTGTGGTGGC | format : html | download : | debug : 

0.009 | 0.009 | search_start;
0.396 | 0.387 | search_plus_done; http://172.18.8.135:50800/match?q=TGGGTAAGTAACTGTGGTGGC&k=0&no_gap=0&offset=0&limit=50
0.428 | 0.033 | search_minus_done; http://172.18.8.135:50800/match?q=GCCACCACAGTTACTTACCCA&k=0&no_gap=0&offset=0&limit=39
0.431 | 0.003 | cgi_end;

GGGenome by @meso_cacase at DBCLS
This page is licensed under a Creative Commons Attribution 4.0 International License (CC BY 4.0).