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ミスマッチ/ギャップを許容 ミスマッチのみ許容 ： 塩基まで (検索する配列長の25%まで)
双方向を検索 ＋方向のみ検索 －方向のみ検索

2025-04-03 18:29:06, GGGenome : DDBJ release 134.0 (Mar, 2024)

Summary:

Results:

検索語に色がつきます（ミスマッチ・挿入欠失）。

KS12003A06 KS12 Capsicum annuum cDNA, mRNA sequence.
CA522243.1:187-206
TGGGATAATTTACTTGGTTTGCCTTTTGGT187TGGGTATGACTCGTTTGCTGAAGTCTGCTTCTGGGCATCTGCTGTAATCT
Solanum melongena mRNA, clone: AE505E01, 5'end, expressed in ovary at 5d post-anthesis.
FS006454.1:192-211
TGGGATAATTTACTTGGTTTGCCTTTTGGT192TGGGTATGACTCGTTTGCTGAAGTATGCTTCTGGCCATCTGCTGTAATTT
Solanum melongena mRNA, clone: LS004O24, 5'end, expressed in ovary at anthesis.
FS020184.1:195-214
TGGGATAATTTACTTGGTTTGCCTTTTGGT195TGGGTATGACTCGTTTGCTGAAGTATGCTTCTGGCCATCTGCTGTAATTT
Solanum melongena mRNA, clone: SmFL14P04, 5'end.
FS076305.1:196-215
TGGGATAATTTACTTGGTTTGCCTTTTGGT196TGGGTATGACTCGTTTGCTGAAGTATGCTTCTGGCCATCTGCTGTAATTT
Solanum dulcamara genome assembly, chromosome: 12.
OX359263.1:3927627-3927646
TGGGATAATTTACTTGGTTTGCCTTTTGGT3927627TGGGTATGACTCGTTTGCTGAAGTATGCTTCTGGCCATTTGCTGTAATTT
Eudonia lacustrata genome assembly, chromosome: 9.
OX387317.1:23280839-23280858
TTGACGCTTGCAATGGGTAATGCCTTGCAA23280839TGGGTATGACTCGTTTGCTGCCGACCCTGACACCATAGTTTTTTTGCCTC
TSA: Capsicum annuum MGMT_Contig7010, mRNA sequence.
JW057254.1:1394-1413
AAATTACAGCAGATGGCCAGAAGCAGACTT1394CAGCAAACGAGTCATACCCAACCAAAAGGCAAACCAAGTAAATTATCCCA
Capsicum annuum Takanotsume DNA, chromosome 10, sequence.
AP026705.1:233792602-233792621
AAATTACAGCAGATGGCCAGAAGCAGACTT233792602CAGCAAACGAGTCATACCCAACCAAAAGGCAAACCAAGTAAATTATCCCA
Capsicum annuum cultivar G1-36576 isolate CaT2T chromosome 10.
CP124722.1:238369172-238369191
AAATTACAGCAGATGGCCAGAAGCAGACTT238369172CAGCAAACGAGTCATACCCAACCAAAAGGCAAACCAAGTAAATTATCCCA

Data Export:

下記のフォーマットで最大100000件まで検索結果を取得できます。

Debug Info:

Redirect URI : https://gggenome.dbcls.jp/ja/ddbj/TGGGTATGACTCGTTTGCTG
lang : ja | db : ddbj | k : 0 | strand : | nogap : | query_string : TGGGTATGACTCGTTTGCTG | format : html | download : | debug : 

0.009 | 0.009 | search_start;
0.530 | 0.521 | search_plus_done; http://172.18.8.135:50400/match?q=TGGGTATGACTCGTTTGCTG&k=0&no_gap=0&offset=0&limit=50
0.640 | 0.110 | search_minus_done; http://172.18.8.135:50400/match?q=CAGCAAACGAGTCATACCCA&k=0&no_gap=0&offset=0&limit=44
0.643 | 0.002 | cgi_end;

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