GGGenome Help | Japanese

Database:
 

Max number of mismatches/gaps mismatches : (no more than 25% of the query length)
Search for: both strand plus strand minus strand

2025-04-07 08:24:31, GGGenome : DDBJ release 134.0 (Mar, 2024)

Summary:

Results:

Matches are highlighted with blue background. Mismatches and indels are marked in red.

Trifolium pratense DNA, clone:RC0206r.ab1.
DE244960.1:53-72
TTTGGAGGACATGACAATAGAGCAACTTCT53TGGGTCATTGCAAGCTTATGAGGAAAAGAAGAAGAAGAAGGAAGATATCG
Trifolium repens isolate ACLI19 chromosome 02_Occ.
CP125838.1:20103207-20103226
TTTGGAGGATATGACAATGGAGCAACTTCT20103207TGGGTCATTGCAAGCTTATGAAGAAAAGAAAAAGAAGAAGGAAGATATCG
Trifolium subterraneum genome assembly, chromosome: 5.
OX637465.1:23500819-23500838
TTTAGAGGCCATGACAATAGAGCAACTTCT23500819TGGGTCATTGCAAGCTTATGAGGAAAGGAAAAAGAAGAAGGAAGATATCG
Trifolium pratense DNA, clone:RCG04274.
DE215565.1:105-124
TATCTTCCTTCTTCTTCTTCTTCTTTTCCT105CATAAGCTTGCAATGACCCAA
Trifolium pratense DNA, clone:RCG07873.
DE217413.1:288-307
CGATATCTTCCTTCTTCTTCTTCTTTTCCT288CATAAGCTTGCAATGACCCAAGAAGTTGCTCCATTG
Trifolium repens isolate ACLI19 chromosome 02_Pall.
CP125839.1:38633993-38634012
TGATATCTTCCTTTTTCTTTTTCTTTTCTT38633993CATAAGCTTGCAATGACCCAAGAAGTTGCTCCATTGTCATATCCTCCAAA
Trifolium repens isolate ACLI19 chromosome 06_0cc.
CP125846.1:35425670-35425689
CGATATCTTCCTTCTTCTTTTTCTTTTCTT35425670CATAAGCTTGCAATGACCCAAGAAGTTGCTCCATTGTCATATCCTCCAAA
Trifolium subterraneum genome assembly, chromosome: 5.
OX637465.1:49398540-49398559
CGATATCTTCCTTCTTCTTTTTCCTTTCCT49398540CATAAGCTTGCAATGACCCAAGAAGTTGCTCTATTGTCATGGCCTCCAAA
Trifolium dubium genome assembly, chromosome: 1.
OX638062.1:14090770-14090789
CGATATCTTCCTTCTTCTTTTTCTTTTCTT14090770CATAAGCTTGCAATGACCCAAGAAGTTGATCAATTGTCATCTCTTCCAAA

Data Export:

Maximum 100000 results can be retrieved in various formats shown below:

Debug Info:

Redirect URI : https://gggenome.dbcls.jp/en/ddbj/TGGGTCATTGCAAGCTTATG
lang : en | db : ddbj | k : 0 | strand : | nogap : | query_string : TGGGTCATTGCAAGCTTATG | format : html | download : | debug : 

0.009 | 0.009 | search_start;
0.117 | 0.108 | search_plus_done; http://172.18.8.135:50400/match?q=TGGGTCATTGCAAGCTTATG&k=0&no_gap=0&offset=0&limit=50
0.177 | 0.060 | search_minus_done; http://172.18.8.135:50400/match?q=CATAAGCTTGCAATGACCCA&k=0&no_gap=0&offset=0&limit=47
0.181 | 0.004 | cgi_end;

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