GGGenome Help | Japanese

Database:
 

Max number of mismatches/gaps mismatches : (no more than 25% of the query length)
Search for: both strand plus strand minus strand

2025-04-19 21:08:55, GGGenome : DDBJ release 134.0 (Mar, 2024)

Summary:

Results:

Matches are highlighted with blue background. Mismatches and indels are marked in red.

Brassica napus genome assembly, chromosome: C03.
HG994367.1:41118190-41118215
AGCGACCGTTTAGTGAGAAAACTGAAATTT41118190TGGTCTAGAAATGCAAGCAAGGCTCACATAACTAGAGTAGATCATACTTTGGCAAC
Brassica oleracea HDEM genome, scaffold: C3.
LR031872.1:41621385-41621410
AGCGACCGTTTAGTGAGAAAACTGAAATTT41621385TGGTCTAGAAATGCAAGCAAGGCTCACATAACTAGAGTAGATCATACTTTGGCAAC
BOHKJ91TR BOHK Brassica oleracea genomic clone BOHKJ91, genomic survey sequence.
BH497839.1:631-656
GTTGCCAAAGTATGATCTACTCTAGTTATG631TGAGCCTTGCTTGCATTTCTAGACCAAA
BONJX43TF BO_1.6_2_KB_tot Brassica oleracea genomic clone BONJX43, genomic survey sequence.
BZ453121.1:48-73
GTTGCCAAAGTATGATCTACTCTAGTTATG48TGAGCCTTGCTTGCATTTCTAGACCAAAATTTCAGTTTTCTCACTAAACGGTCGCT
Brassica napus cultivar Xiang5A chromosome 18.
CP123893.1:38117427-38117452
GTTGCCAAAGTATGATCTACTCTAGTTATG38117427TGAGCCTTGCTTGCATTTCTAGACCAAAATTTCAGTTTTCTCACTAAACGGTCGCT

Data Export:

Maximum 100000 results can be retrieved in various formats shown below:

Debug Info:

Redirect URI : https://gggenome.dbcls.jp/en/ddbj/TGGTCTAGAAATGCAAGCAAGGCTCA
lang : en | db : ddbj | k : 0 | strand : | nogap : | query_string : TGGTCTAGAAATGCAAGCAAGGCTCA | format : html | download : | debug : 

0.009 | 0.009 | search_start;
0.113 | 0.104 | search_plus_done; http://172.18.8.135:50400/match?q=TGGTCTAGAAATGCAAGCAAGGCTCA&k=0&no_gap=0&offset=0&limit=50
0.142 | 0.029 | search_minus_done; http://172.18.8.135:50400/match?q=TGAGCCTTGCTTGCATTTCTAGACCA&k=0&no_gap=0&offset=0&limit=48
0.144 | 0.002 | cgi_end;

GGGenome by @meso_cacase at DBCLS
This page is licensed under a Creative Commons Attribution 4.0 International License (CC BY 4.0).