GGGenome Help | Japanese

Database:
 

Max number of mismatches/gaps mismatches : (no more than 25% of the query length)
Search for: both strand plus strand minus strand

2025-04-20 14:16:28, GGGenome : DDBJ release 134.0 (Mar, 2024)

Summary:

Results:

Matches are highlighted with blue background. Mismatches and indels are marked in red.

Brassica rapa subsp. pekinensis, pooled multiple clones, WORKING DRAFT SEQUENCE, 66 unordered pieces.
FJ789649.1:87642-87668
CTATCTATAGGAATTACATTATTATGTATT87642TGGTCTGATTTTTAAATAATTTGTTTCTTGCATTTGAATTAAAGTACAATTATATAT
Brassica napus cultivar Xiang5A chromosome 8.
CP123883.1:11647855-11647881
CTATCTATAGGAATTACATTATTATGTATT11647855TGGTCTGATTTTTAAATAATTTGTTTCTTGCATTTGAATTAAAGTACAATTGTATAT
KR 1020090132213-A/27: A method for discriminating Chinese cabbage cultivars using molecular markers.
DI175396.1:1-27
1GAAACAAATTATTTAAAAATCAGACCA
Brassica rapa subsp. pekinensis, pooled multiple clones, WORKING DRAFT SEQUENCE, 878 unordered pieces.
FJ789640.1:4538586-4538612
ATATATAATTGTACTTTAATTCAAATGCAA4538586GAAACAAATTATTTAAAAATCAGACCAAATACATAATAATGTAATTCCTATAGATAG
Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrH102A07, complete sequence.
AC189617.1:144097-144123
ATATATAATTGTACTTTAATTCAAATGCAA144097GAAACAAATTATTTAAAAATCAGACCAAATACATAATAATGTAATTCCTATAGATAG
Brassica napus genome assembly, chromosome: A07.
HG994361.1:17981057-17981083
ATATACAATTGTACTTTAATTCAAATGCAA17981057GAAACAAATTATTTAAAAATCAGACCAAATACATAATAATGTAATTCCTATAGATAG
Brassica rapa genome, scaffold: A07.
LR031574.1:16953748-16953774
ATATACAATTGTACTTTAATTCAAATGCAA16953748GAAACAAATTATTTAAAAATCAGACCAAATACATAATAATGTAATTCCTATACATAG
Brassica rapa genome assembly, chromosome: A07.
LS974623.2:17245229-17245255
ATATACAATTGTACTTTAATTCAAATGCAA17245229GAAACAAATTATTTAAAAATCAGACCAAATACATAATAATGTAATTCCTATACATAG

Data Export:

Maximum 100000 results can be retrieved in various formats shown below:

Debug Info:

Redirect URI : https://gggenome.dbcls.jp/en/ddbj/TGGTCTGATTTTTAAATAATTTGTTTC
lang : en | db : ddbj | k : 0 | strand : | nogap : | query_string : TGGTCTGATTTTTAAATAATTTGTTTC | format : html | download : | debug : 

0.009 | 0.009 | search_start;
0.110 | 0.102 | search_plus_done; http://172.18.8.135:50400/match?q=TGGTCTGATTTTTAAATAATTTGTTTC&k=0&no_gap=0&offset=0&limit=50
0.154 | 0.044 | search_minus_done; http://172.18.8.135:50400/match?q=GAAACAAATTATTTAAAAATCAGACCA&k=0&no_gap=0&offset=0&limit=48
0.158 | 0.004 | cgi_end;

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