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ミスマッチ/ギャップを許容 ミスマッチのみ許容 ： 塩基まで (検索する配列長の25%まで)
双方向を検索 ＋方向のみ検索 －方向のみ検索

2025-04-03 11:50:50, GGGenome : DDBJ release 134.0 (Mar, 2024)

Summary:

Results:

検索語に色がつきます（ミスマッチ・挿入欠失）。

Anas platyrhynchos genome assembly, chromosome: 4.
LS423614.1:15940766-15940785
ATTCTTGGACTCTATAGCCCAGCAGTAATT15940766TGGTGCATGTTGTTGTTGTGTCTAAGCATATTTTATACTGTTCAATGGAT
Somateria mollissima genome assembly, chromosome: 4.
OX598693.1:60518996-60519015
ATTCTTGGACTCTATAGCCCAGCAGTAATT60518996TGGTGCATGTTGTTGTTGTGTCTACGCATATTTTATACTGTTCAATGGAT
Cyclopterus lumpus genome assembly, chromosome: 5.
OY735152.1:5102530-5102549
GGGGGGGGGGGGGGGGGGGGGTGGTGGTGG5102530TGGTGCATGTTGTTGTTGTGGGGATTAACGGAGGGGGCAAAAAAATAACT
Sardina pilchardus genome assembly, chromosome: 14.
OY974099.1:20731129-20731148
CTTGAGGCTTGAAACAAGCCATTTGAAATA20731129TGGTGCATGTTGTTGTTGTGGTTAAAATAGACTTACAGTGACATGCGAGC
Scophthalmus maximus genome assembly, chromosome: 9.
OY978260.1:11138910-11138929
TCAGTGAAGATGGATTAACATCCTGGGCTG11138910TGGTGCATGTTGTTGTTGTGATGCGATGTGATATAGCAAAAGAAAAAACA
Protomyctophum bolini genome assembly, chromosome: 15.
OZ001280.1:21876662-21876681
GCGTAGTAATTTGCTATAAGTCCAGTTTGT21876662TGGTGCATGTTGTTGTTGTGGTTCAGCTGCTGTGGTTCAGCTGGTGTTAT
Anas acuta genome assembly, chromosome: 4.
OZ009966.1:59715889-59715908
ATTCTTGGACTCCATAGCCCAGCAGTAATT59715889TGGTGCATGTTGTTGTTGTGTCTAAGCATATTTTATACTGTTCAATGGAT
Hordeum vulgare subsp. vulgare genome assembly, chromosome: 1H.
HG994374.1:465060187-465060206
TAGTCTAGACTAGAAAAGTTGGCCGAGCTT465060187TGGTGCATGTTGTTGTTGTGTTTTTTTTAGAAAAATCATGTTTTTTTGTG
Hordeum vulgare subsp. vulgare genome assembly, chromosome: 1H.
LR722616.1:509962110-509962129
TAGTCTAGACTAGAAAAGTTGGCCGAGCTT509962110TGGTGCATGTTGTTGTTGTGTTTTTTTTAGAAAAATCATGTTTTTTTGTG
Hordeum vulgare subsp. vulgare genome assembly, chromosome: 1H.
LR812970.1:509962110-509962129
TAGTCTAGACTAGAAAAGTTGGCCGAGCTT509962110TGGTGCATGTTGTTGTTGTGTTTTTTTTAGAAAAATCATGTTTTTTTGTG
Hordeum vulgare subsp. vulgare genome assembly, chromosome: 1H.
LR828101.2:523894115-523894134
TAGTCTAGACTAGAAAAGTTGGCCGAGCTT523894115TGGTGCATGTTGTTGTTGTGTTTTTTTAGAAAAATCATGTTTTTTTGCGA
Hordeum vulgare subsp. vulgare genome assembly, chromosome: 1H.
LR828139.1:545469473-545469492
TAGTCTAGACTAGAAAAGTTGGCCGAGCTT545469473TGGTGCATGTTGTTGTTGTGTTTTTTTAGAAAAATCATGTTTTTTTGCGA
Hordeum vulgare subsp. vulgare genome assembly, chromosome: 1H.
LR828146.2:511254459-511254478
TAGTCTAGACTAGAAAAGTTGGCCGAGCAT511254459TGGTGCATGTTGTTGTTGTGTTTTTTTAGAAAAATCATGTTTTTTTGCGA
Hordeum vulgare subsp. vulgare genome assembly, chromosome: 1H.
LR828266.1:507696648-507696667
TAGTCTAGACTAGAAAAGTTGGCCGAGCTT507696648TGGTGCATGTTGTTGTTGTGTTTTTTTTAGAAAAATCATGTTTTTTTGTG
Hordeum vulgare subsp. vulgare genome assembly, chromosome: 1H.
LR865395.1:490779931-490779950
TAGTCTAGACTAGAAAAGTTGGCCGAGCTT490779931TGGTGCATGTTGTTGTTGTGTTTTTTTTAGAAAAATCATGTTTTTTTGTG
Hordeum vulgare subsp. vulgare genome assembly, chromosome: 1H.
LR890096.1:504385986-504386005
TAGTCTAGACTAGAAAAGTTGGCCGAGCTT504385986TGGTGCATGTTGTTGTTGTGTTTTTTTTAGAAAAATCATGTTTTTTTGTG
Hordeum vulgare subsp. vulgare genome assembly, chromosome: 1H.
OU015681.1:516292126-516292145
TAGTCTAGACTAGAAAAGTTGGCCGAGCTT516292126TGGTGCATGTTGTTGTTGTGTTTTTTTTAGAAAAATCATGTTTTTTTGTG
Avena atlantica genome assembly, chromosome: 2A.
OU342734.1:405884329-405884348
GGGTAAGGGTTGTGTTTCGCTTTGCCTCCA405884329TGGTGCATGTTGTTGTTGTGATGTTGCATCTTGATACACTCGAGCTATGT
Vicia faba genome assembly, chromosome: 6.
OX451741.1:166498752-166498771
TCTCTGATTCTGTTGATGATAGTTTCTCCG166498752TGGTGCATGTTGTTGTTGTGCTTGCGAAACAATGACATGAGTAGGATAAT
Hordeum vulgare genome assembly, chromosome: 1H.
OX459916.1:503156577-503156596
TAGTCTAGACTAGAAAAGTTGGCCGAGCTT503156577TGGTGCATGTTGTTGTTGTGTTTTTTTTAGAAAAATCATGTTTTTTTGTG
Hordeum vulgare genome assembly, chromosome: 1H.
OX459984.1:508457505-508457524
TAGTCTAGACTAGAAAAGTTGGCCGAGCTT508457505TGGTGCATGTTGTTGTTGTGTTTTTTTTAGAAAAATCATGTTTTTTTGTG
Hordeum vulgare subsp. vulgare genome assembly, chromosome: 1H.
OX460033.1:501844395-501844414
TAGTCTAGACTAGAAAAGTTGGCCGAGCTT501844395TGGTGCATGTTGTTGTTGTGTTTTTTTTAGAAAAATCATGTTTTTTTGTG
Hordeum vulgare genome assembly, chromosome: 1H.
OX460054.1:503227114-503227133
TAGTCTAGACTAGAAAAGTTGGCCGAGCTT503227114TGGTGCATGTTGTTGTTGTGTTTTTTTTAGAAAAATCATGTTTTTTTGTG
Hordeum vulgare genome assembly, chromosome: 1H.
OX460067.1:505891656-505891675
TAGTCTAGACTAGAAAAGTTGGCCGAGCTT505891656TGGTGCATGTTGTTGTTGTGTTTTTTTTAGAAAAATCATGTTTTTTTGTG
Hordeum vulgare genome assembly, chromosome: 1H.
OX460075.1:507325960-507325979
TAGTCTAGACTAGAAAAGTTGGCCGAGCTT507325960TGGTGCATGTTGTTGTTGTGTTTTTTTTAGAAAAATCATGTTTTTTTGTG
Hordeum vulgare genome assembly, chromosome: 1H.
OX460096.1:509324435-509324454
TAGTCTAGACTAGAAAAGTTGGCCGAGCAT509324435TGGTGCATGTTGTTGTTGTGTTTTTTTAGAAAAATCATGTTTTTTTGCGA
Hordeum vulgare genome assembly, chromosome: 1H.
OX460103.1:505538333-505538352
TAGTCTAGACTAGAAAAGTTGGCCGAGCTT505538333TGGTGCATGTTGTTGTTGTGTTTTTTTAGAAAAATCATGTTTTTTTGCGA
Hordeum vulgare genome assembly, chromosome: 1H.
OX460117.1:504965728-504965747
TAGTCTAGACTAGAAAAGTTGGCCGAGCTT504965728TGGTGCATGTTGTTGTTGTGTTTTTTTAGAAAAATCATGTTTTTTTGCGA
Hordeum vulgare genome assembly, chromosome: 1H.
OX460124.1:511020319-511020338
TAGTCTAGACTAGAAAAGTTGGCCGAGCTT511020319TGGTGCATGTTGTTGTTGTGTTTTTTTTAGAAAAATCATGTTTTTTTGTG
Hordeum vulgare genome assembly, chromosome: 1H.
OX460159.1:503808411-503808430
TAGTCTAGACTAGAAAAGTTGGCCGAGCTT503808411TGGTGCATGTTGTTGTTGTGTTTTTTTTAGAAAAATCATGTTTTTTTGTG
Hordeum vulgare genome assembly, chromosome: 1H.
OX460173.1:514677724-514677743
TAGTCTAGACTAGAAAAGTTGGCCGAGCTT514677724TGGTGCATGTTGTTGTTGTGTTTTTTTAGAAAAATCATGTTTTTTTGCGA
Hordeum vulgare genome assembly, chromosome: 1H.
OX460180.1:503618122-503618141
TAGTCTAGACTAGAAAAGTTGGCCGAGCTT503618122TGGTGCATGTTGTTGTTGTGTTTTTTTTAGAAAAATCATGTTTTTTTGTG
Hordeum vulgare genome assembly, chromosome: 1H.
OX460201.1:509302019-509302038
TAGTCTAGACTAGAAAAGTTGGCCGAGCTT509302019TGGTGCATGTTGTTGTTGTGTTTTTTTTAGAAAAATCATGTTTTTTTGTG
Hordeum vulgare genome assembly, chromosome: 1H.
OX460222.1:506368572-506368591
TAGTCTAGACTAGAAAAGTTGGCCGAGCTT506368572TGGTGCATGTTGTTGTTGTGTTTTTTTTAGAAAAATCATGTTTTTTTGTG
Hordeum vulgare genome assembly, chromosome: 1H.
OX460229.1:506750974-506750993
TAGTCTAGACTAGAAAAGTTGGCCGAGCAT506750974TGGTGCATGTTGTTGTTGTGTTTTTTTAGAAAAATCATGTTTTTTTGCGA
Hordeum vulgare genome assembly, chromosome: 1H.
OX460236.1:507514089-507514108
TAGTCTAGACTAGAAAAGTTGGCCGAGCTT507514089TGGTGCATGTTGTTGTTGTGTTTTTTTTAGAAAAATCATGTTTTTTTGTG
Hordeum vulgare genome assembly, chromosome: 1H.
OX460243.1:511722261-511722280
TAGTCTAGACTAGAAAAGTTGGCCGAGCTT511722261TGGTGCATGTTGTTGTTGTGTTTTTTTTAGAAAAATCATGTTTTTTTGTG
Hordeum vulgare genome assembly, chromosome: 1H.
OX460250.1:509947345-509947364
TAGTCTAGACTAGAAAAGTTGGCCGAGCTT509947345TGGTGCATGTTGTTGTTGTGTTTTTTTTAGAAAAATCATGTTTTTTTGTG
Hordeum vulgare genome assembly, chromosome: 1H.
OX460306.1:508302143-508302162
TAGTCTAGACTAGAAAAGTTGGCCGAGCTT508302143TGGTGCATGTTGTTGTTGTGTTTTTTTAGAAAAATCATGTTTTTTTGCGA
Hordeum vulgare subsp. vulgare genome assembly, chromosome: 1H.
OX638791.1:508876000-508876019
TAGTCTAGACTAGAAAAGTTGGCCGAGCTT508876000TGGTGCATGTTGTTGTTGTGTTTTTTTTAGAAAAATCATGTTTTTTTGTG
Sacculina carcini genome assembly, chromosome: 17.
OU696586.1:3991957-3991976
CGTACTGTTTATACTGCTATGTGTTTTTGT3991957TGGTGCATGTTGTTGTTGTGTTTTGTTGTTTTTGCCACCGCGCCGATATA
Dicrocoelium dendriticum genome assembly, chromosome: 7.
OX104069.1:56015268-56015287
TTCAGTAGTCTACGGGATACAATGAAACGT56015268TGGTGCATGTTGTTGTTGTGGAACATTCCACGCTTATTTAGCAGTCCGAG
Acronicta leporina genome assembly, chromosome: 2.
OX366513.1:948059-948078
TTTTAAAATTCTTGTTCGTTTGTTACGGGT948059TGGTGCATGTTGTTGTTGTGCATGTTGGTGCATGGACTATATTCCCTAAA
Polietes domitor genome assembly, chromosome: 1.
OX377618.1:186962827-186962846
CTTCGGTTTCTTACAAGGTGTCCTAAACTG186962827TGGTGCATGTTGTTGTTGTGGGATGTTTTTTCAGAGTGCTAAGCGAAATT
Branchellion lobata genome assembly, chromosome: 7.
OX387252.1:10338327-10338346
TTGTTGTTGTTGTGGTGCATGTTGTTGATG10338327TGGTGCATGTTGTTGTTGTGGTGCATGTTGTTGATGTTGATATGGGAGCT
Dicyrtomina minuta genome assembly, chromosome: 3.
OX461811.1:70266698-70266717
TTGCTGTTGTTGCTGTTGCTGTTGTGGGGT70266698TGGTGCATGTTGTTGTTGTGGCTGTGGTGAAGGGCCGGCCTGTCCCTGGT
Lithosia quadra genome assembly, chromosome: Z.
OY754873.1:18639118-18639137
CGTTTTCCAAACCCAAGGAGCAGGCCATCA18639118TGGTGCATGTTGTTGTTGTGTTGAAGGTGTATGTTGAGTGAGACTTTAAG
Scophthalmus maximus chromosome 9.
CP026251.1:13971078-13971097
TGTTTTTTCTTTTGCTATATCACATCGCAT13971078CACAACAACAACATGCACCACAGCTCAGGATGTTAATCCATCTTCACTGA
Thalassophryne amazonica genome assembly, chromosome: 1.
LR722966.1:98695729-98695748
TTGACAATAGGTGAGATATATTGTTTGTCT98695729CACAACAACAACATGCACCACATGCAGGTCAGCTGCAAATGCTTGGAAAG
Astatotilapia calliptera genome assembly, chromosome: 7.
LS420025.2:34502183-34502202
CTCCAAGTTTAGTTTCAAAACTAGAGCATC34502183CACAACAACAACATGCACCAAGCACTGCAACTCCCACCCAGCACCCACCC
Arachis hypogaea DNA, clone: 8iHA00A13, cultivar: YI-0311.
DE998447.1:487-506
TCTTAGGAATCGATATTGTTTTTTTATACT487CACAACAACAACATGCACCAAAGAGAAAGAAAAAAAAAAGCTGACTAAAA
Hordeum vulgare subsp. vulgare cultivar Morex clone BAC 0017B16, *** SEQUENCING IN PROGRESS ***, 14 unordered pieces.
AC262283.1:9219-9238
CACAAAAAAACATGATTTTTCTAAAAAAAA9219CACAACAACAACATGCACCAAAGCTCGGCCAACTTTTCTAGTCTAGACTA
Arachis hypogaea cultivar Shitouqi chromosome A05.
CP030987.1:91105803-91105822
TCTTAGGAATCGATATTGTTTTTTTATACT91105803CACAACAACAACATGCACCAAAGAGAAAGAAAAAAAAAAGCTGACTAAAA
UNVERIFIED_CONTAM: Avena longiglumis isolate 447 chromosome 6.
CP125978.1:36150612-36150631
CACACAGACACAATACAACAAAAGTGCACA36150612CACAACAACAACATGCACCAGCACCACAGAGCACACAACAACACTCACAC
Vicia faba genome assembly, chromosome: 1S.
OX451735.1:805690457-805690476
ATTATTCTACTCATGTCACTGTTACTCAAG805690457CACAACAACAACATGCACCACAGAGAAACTATCAACAACAGAATCAGAGA
Vicia faba genome assembly, chromosome: 3.
OX451738.1:554307209-554307228
ATTATCCTACTCCTATAGTTGTTCCTCAAA554307209CACAACAACAACATGCACCACAAAGAAACTATCAGCAACAGAGATATCAG
Pseudopediastrum boryanum genome assembly, chromosome: 11.
OY744503.1:7528853-7528872
GTTTGCCAATGTAAGGTTCACACCCACACA7528853CACAACAACAACATGCACCACTGCACAGTAAATTTCCAGCACCATACTCC
Calamotropha paludella genome assembly, chromosome: 17.
OV656820.1:3983871-3983890
AAGTATAAACGAATAATTGCTTATGTTTAT3983871CACAACAACAACATGCACCAAGCGGCCCTCGATATTCCTTACATTACATA
Neria commutata genome assembly, chromosome: 4.
OY735248.1:4208068-4208087
TCGAAGGGCGCTGAGGACTACGCATAATAT4208068CACAACAACAACATGCACCATTCTATTGCACTGGCTCTCTACAATTTGCC
Bovine rotavirus A strain RVA/Cow-wt/BRA/1427-GO/2008/G6P[5] VP7 gene, partial cds.
MG452869.1:704-723
TGTGGATGGTGTTAATCATAAATTGAACGT704CACAACAACAACATGCACCATACGCAACTGTAAAAAATTAGGACCAAGAG
Bovine rotavirus A strain RVA/Cow-wt/BRA/1556-GO/2009/G6P[5] VP7 gene, partial cds.
MG452874.1:704-723
TGTGGATGGTGTTAATCATAAATTGAACGT704CACAACAACAACATGCACCATACGCAACTGTAAAAAATTAGGACCAAGAG
Bovine rotavirus A strain RVA/Cow-wt/BRA/1869-MS/2014/G6P[5] VP7 gene, partial cds.
MG452891.1:657-676
TGTGGATGGTGTTAATCATAAATTGAACGT657CACAACAACAACATGCACCATACGCAACTGTAAAAAATTAGGACCAAGAG
Rotavirus A strain RVA/Cow-wt/ARG/5595DR_D_BA/2010/G6P[5] outer capsid glycoprotein gene, complete cds.
OR253967.1:717-736
TGTAGATGGTGTTAACCATAAATTGAACGT717CACAACAACAACATGCACCATACGCAACTGTAAAAAATTGGGACCAAGGG

Data Export:

下記のフォーマットで最大100000件まで検索結果を取得できます。

Debug Info:

Redirect URI : https://gggenome.dbcls.jp/ja/ddbj/TGGTGCATGTTGTTGTTGTG
lang : ja | db : ddbj | k : 0 | strand : | nogap : | query_string : TGGTGCATGTTGTTGTTGTG | format : html | download : | debug : 

0.009 | 0.009 | search_start;
0.240 | 0.231 | search_plus_done; http://172.18.8.135:50400/match?q=TGGTGCATGTTGTTGTTGTG&k=0&no_gap=0&offset=0&limit=50
0.423 | 0.183 | search_minus_done; http://172.18.8.135:50400/match?q=CACAACAACAACATGCACCA&k=0&no_gap=0&offset=0&limit=3
0.433 | 0.011 | cgi_end;

GGGenome by @meso_cacase at DBCLS
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