GGGenome Help | English

データベース：
 

ミスマッチ/ギャップを許容 ミスマッチのみ許容 ： 塩基まで (検索する配列長の25%まで)
双方向を検索 ＋方向のみ検索 －方向のみ検索

2025-04-03 11:44:20, GGGenome : DDBJ release 134.0 (Mar, 2024)

Summary:

Results:

検索語に色がつきます（ミスマッチ・挿入欠失）。

C20R5_48_F05_E002.g1 USDA-Tifton Peanut Library C20R5 Arachis hypogaea cDNA clone C20R5-048-38_F05 5', mRNA sequence.
ES718615.1:391-410
CACCCAGCATGGAATGGCAATGGCTTCCAG391TGGTGCCACTCAAGTTGTCTAGGGGACTCAATGATGCATGTGCGGACATG
Dur25.root.ADAA-aag20a03.b1 DUR25-root Arachis duranensis cDNA 5', mRNA sequence.
GW939279.1:253-272
CACCCAGCATGGAATGGCAATGGCTTCCAG253TGGTGCCACTCAAGTTGTCTAAGGGACTCAATGATGCATGTGCGGACATG
TSA: Arachis hypogaea CL14814Contig1.Arhy mRNA sequence.
EZ746708.1:391-410
CCCCCAGCATGGAATGGCAATGGCTTCCAG391TGGTGCCACTCAAGTTGTCTAGGGGACTCAATGATGCATGTGCGGACATG
TSA: Arachis duranensis Aduranensis_small_c5478_1 mRNA sequence.
JR338771.1:251-270
CACCCAGCATGGAATGGCAATGGCTTCCAG251TGGTGCCACTCAAGTTGTCTAAGGGACTCGAATGATGCATGTGCGGACAT
TSA: Arachis hypogaea Ahy.Unigene38206 mRNA sequence.
JR575169.1:214-233
CACCCAGCATGGAATGGCAATGGCTTCCAG214TGGTGCCACTCAAGTTGTCTAGGG
Lupinus angustifolius cultivar Tanjil voucher WA chromosome LG-01.
CP023113.2:30710874-30710893
GTACAAAACACACCATGGTGTGGTGTCAAG30710874TGGTGCCACTCAAGTTGTCTAGCTAGAATATAAAATATCTGGAATTAATT
Arachis hypogaea cultivar Shitouqi chromosome A03.
CP030985.1:118879243-118879262
CACCCAGCATGGAATGGCAATGGCTTCCAG118879243TGGTGCCACTCAAGTTGTCTAAGGGACTCAATGATGCATGTGCGGACATG
Arachis hypogaea cultivar Shitouqi chromosome B03.
CP030995.1:120125609-120125628
CACCCAGCATGGAATGGCAATGGCTTCCAG120125609TGGTGCCACTCAAGTTGTCTAGGGGACTCAATGATGCATGTGCGGACATG
Arachis ipaensis cultivar K30076 chromosome 03.
CP049894.1:117919540-117919559
CACCCAGCATGGAATGGCAATGGCTTCCAG117919540TGGTGCCACTCAAGTTGTCTAGGGGACTCAATGATGCATGTGCGGACATG
Trifolium subterraneum genome assembly, chromosome: 1.
OX637461.1:4920773-4920792
TACTACAAGTCATGGAGTTTTGGCATCAAG4920773TGGTGCCACTCAAGTTGTCTAGATATCATGACAAAATTCAACAACGTTTG
Trifolium subterraneum genome assembly, chromosome: 1.
OX637461.1:4936908-4936927
TACTATAAGTTATGGAGTTTTGGCATCAAG4936908TGGTGCCACTCAAGTTGTCTAGATATCATGAGAAAATTCAACAAGGTTTG
Trifolium dubium genome assembly, chromosome: 14.
OX638075.1:3534947-3534966
TACTACAAGTCATGGAGTTTTGGCATCAAG3534947TGGTGCCACTCAAGTTGTCTAGATATCATATGAGAAAATTCAACAAGTTG
Medicago lupulina genome assembly, chromosome: 4.
OY283142.1:5306728-5306747
TGATACTCCACAACATGGCATGGCTTCAAG5306728TGGTGCCACTCAAGTTGTCTAGATATCATATAAGAAAATTCAACAAGTTG
Astragalus glycyphyllos genome assembly, chromosome: 4.
OY754310.1:80407533-80407552
GGATACCCCACTTCATGGTATGGCCTCAAG80407533TGGTGCCACTCAAGTTGTCTAGAATTTGTTGTTTATATTGTTTGTGTGAA
C20L_8_G08_E002.g1 USDA-Tifton Peanut Library C20L Arachis hypogaea cDNA clone C20L-008-63_G08 5', mRNA sequence.
ES757907.1:237-256
CATGTCCGCACATGCATCATTGAGTCCCCT237AGACAACTTGAGTGGCACCACTGGAAGCCATTGCCATTCCATGCTGGGGG
TSA: Arachis stenosperma Astenosperma_small_rep_c371_1 mRNA sequence.
JR331794.1:262-281
CATGTCCGCACATGCATCATTGAGTCCCTT262AGACAACTTGAGTGGCACCACTGGAAGCCATTGCCATTCCATGCTGGGTG
Arachis hypogaea DNA, clone: 8iHA03O13, cultivar: YI-0311.
DE998523.1:557-576
CATGTCCGCACATGCATCATTGAGTCCCCT557AGACAACTTGAGTGGCACCACTGGAAGCCATTGCCATTCCATGCTGGGTG
Lupinus angustifolius cultivar Tanjil voucher WA chromosome LG-01.
CP023113.2:30709240-30709259
AATTAATTCCAGATATTTTATATTCTAGCT30709240AGACAACTTGAGTGGCACCACTTGACACCACACCATGGTGTGTTTTGTAC
Trifolium repens isolate ACLI19 chromosome 04_Occ.
CP125842.1:58986096-58986115
TGTTGAATTTTCTCATGATATATATAATCT58986096AGACAACTTGAGTGGCACCACTTGATGCCAAAACTCCATGACTTGTAGTA
Medicago arabica genome assembly, chromosome: 1.
OX326964.1:65453392-65453411
CAACGTGTTGAATTTTCTTATATGATATCT65453392AGACAACTTGAGTGGCACCACTTGAAGCCATGCCATGTTGTGTAGTATCA
Lathyrus sativus genome assembly, chromosome: 7.
OZ012741.1:669154688-669154707
ATTTTCTCATGATATATATCTCTATTCTCT669154688AGACAACTTGAGTGGCACCACTTGAAGCCAAAACACCCTCTCGTGTAGTA

Data Export:

下記のフォーマットで最大100000件まで検索結果を取得できます。

Debug Info:

Redirect URI : https://gggenome.dbcls.jp/ja/ddbj/TGGTGCCACTCAAGTTGTCT
lang : ja | db : ddbj | k : 0 | strand : | nogap : | query_string : TGGTGCCACTCAAGTTGTCT | format : html | download : | debug : 

0.009 | 0.009 | search_start;
0.473 | 0.464 | search_plus_done; http://172.18.8.135:50400/match?q=TGGTGCCACTCAAGTTGTCT&k=0&no_gap=0&offset=0&limit=50
0.673 | 0.200 | search_minus_done; http://172.18.8.135:50400/match?q=AGACAACTTGAGTGGCACCA&k=0&no_gap=0&offset=0&limit=36
0.677 | 0.005 | cgi_end;

GGGenome by @meso_cacase at DBCLS
This page is licensed under a Creative Commons Attribution 4.0 International License (CC BY 4.0).