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ミスマッチ/ギャップを許容 ミスマッチのみ許容 ： 塩基まで (検索する配列長の25%まで)
双方向を検索 ＋方向のみ検索 －方向のみ検索

2025-03-14 15:59:46, GGGenome : DDBJ release 134.0 (Mar, 2024)

Summary:

Results:

検索語に色がつきます（ミスマッチ・挿入欠失）。

Lagenorhynchus albirostris genome assembly, chromosome: 3.
OX459074.1:144937978-144937997
AACTGCCTTTTTGTTTTTCCTGTGAGTGTG144937978TGGTGTTGAAGAAGGCAATGACAGTTGGGCATCACTGCCTCAATTTGTTC
Balaenoptera acutorostrata genome assembly, chromosome: 2.
OX465351.1:155219559-155219578
AACTGCCTTTTTGTTTTTCCTGTGAGTGTG155219559TGGTGTTGAAGAAGGCAATGACAGTTGGGCATCACTGACTCAATTTGTTC
Stenella coeruleoalba genome assembly, chromosome: 3.
OX596387.1:145097630-145097649
AACTGCCTTTTTGTTTTTCCTGTGAGTGTG145097630TGGTGTTGAAGAAGGCAATGACAGTTGGGCATCACTGCCTCAATTTGTTC
Globicephala melas genome assembly, chromosome: 3.
OY734041.1:144345554-144345573
AACTGCCTTTTTGTTTTTCCTGTGAGTGTG144345554TGGTGTTGAAGAAGGCAATGACAGTTGGGCATCACTGCCTCAATTTGTTC
Soybean clone JCVI-FLGm-26N3 unknown mRNA.
BT098469.1:1180-1199
ACTAATTCTGGTGCCAGATGGTGGTGGTGG1180TGGTGTTGAAGAAGGCAATGATGATTCCTTGTGGAAAGTAGCACCAAGAG
Glycine max cultivar Williams 82 chromosome 19.
CP126444.1:1084348-1084367
TCTAGTGCCAGATGATGGTGGTGGTGGTGG1084348TGGTGTTGAAGAAGGCAATGATGAATCCTTGTGGAAAGTAGCACCAAGAG
Climacium dendroides genome assembly, chromosome: 6.
OX467087.1:8689033-8689052
ACGATGGATGTTTGAGTGGGACAATTACAA8689033TGGTGTTGAAGAAGGCAATGTGGCCAATGGTGGTCGTTTGATAAATGTGA
Bartonella quintana strain KorN chromosome, complete genome.
CP041670.1:1559329-1559348
AGGAATGGGCGTTTCTGTTGGAGAAGATAA1559329TGGTGTTGAAGAAGGCAATGATAGTTATGAAGGTAGAATAAATACGGTTC
Roseburia rectibacter strain NSJ-69 chromosome, complete genome.
CP092473.1:1922480-1922499
TTTTACCGCAAACATGGAATCGCTGCTTGA1922480TGGTGTTGAAGAAGGCAATGTAAACTGGAAAACAGTGGTACGTAATTTCT
Sarcophaga caerulescens genome assembly, chromosome: 5.
OV656868.1:47472233-47472252
AGTGGAGCAACCATCCATCCGTAAAAAGTA47472233TGGTGTTGAAGAAGGCAATGTTTTTTTTACATCATTTTTTTATGATTATT
Orcinus orca genome assembly, chromosome: 3.
OW443362.1:29528192-29528211
GAACAAATTGAGGCAGTGATGCCCAACTGT29528192CATTGCCTTCTTCAACACCACACACTCACAGGAAAAACAAAAAGGCAGTT
Delphinus delphis genome assembly, chromosome: 3.
OX465328.1:27998428-27998447
GAACAAATTGAGGCAGTGATGTCCAACTGT27998428CATTGCCTTCTTCAACACCACACACTCACAGGAAAAACAAAAAGGCAGTT
Sequence 4385 from Patent EP2148885.
HI533413.1:260-279
CTCTTGGTGCTACTTTCCACAAGGAATCAT260CATTGCCTTCTTCAACACCACCACCACCACCATCTGGCACCAGAATTAGT
Sequence 99959 from patent US 9029636.
HL009023.1:125-144
CTCTTGGTGCTACTTTCCACAAGGATTCAT125CATTGCCTTCTTCAACACCACCACCACCACCACCATCATCTGGCACTAGA
Sequence 4385 from patent US 9271455.
HL706748.1:260-279
CTCTTGGTGCTACTTTCCACAAGGAATCAT260CATTGCCTTCTTCAACACCACCACCACCACCATCTGGCACCAGAATTAGT
Sequence 270 from patent US 11802288.
OT811754.1:1761-1780
CTCTTGGTGCTACTTTCCACAAGGAATCAT1761CATTGCCTTCTTCAACACCACCACCACCACCATCTGGCACCAGAATTAGT
ss58b05.y1 Gm-c1062 Glycine max cDNA clone GENOME SYSTEMS CLONE ID: Gm-c1062-586 5' similar to TR:Q9ZV53 Q9ZV53 PUTATIVE ZINC FINGER PROTEIN, mRNA sequence.
BE806387.1:117-136
CTCTTGGTGCTACTTTCCACAAGGAATCAT117CATTGCCTTCTTCAACACCACCACCACCACCATCTGGCACCAGAATTAGT
sac47f04.y1 Gm-c1062 Glycine max cDNA clone GENOME SYSTEMS CLONE ID: Gm-c1062-3319 5', mRNA sequence.
BG405063.1:340-359
CTCTTGGTGCTACTTTCCACAAGGAATCAT340CATTGCCTTCTTCAACACCACCACCACCACCATCTGGCACCAGAATTAGT
GLPAR07TF JCVI-SOY1 Glycine max cDNA 5', mRNA sequence.
FK002220.1:561-580
CTCTTGGTGCTACTTTCCACAAGGAATCAT561CATTGCCTTCTTCAACACCACCACCACCACCATCTGGCACCAGAATTAGT
454GmaGlobSeed95062 Soybean Seeds Containing Globular-Stage Embryos Glycine max cDNA, mRNA sequence.
FK360430.1:33-52
CTCTTGGTGCTACTTTCCACAAGGAATCAT33CATTGCCTTCTTCAACACCACCACCACCACCATATCCACCGCTACCGCGG
Solanum pinnatisectum cultivar CGN17745 chromosome 4.
CP047561.1:32536486-32536505
AAGATTTTGAGGAAAGCCCCATGGACATAT32536486CATTGCCTTCTTCAACACCATTATCATCCATTTGATCATCTTCATCAACA
Glycine max cultivar Williams 82 chromosome 13.
CP126438.1:17176392-17176411
CTCTTGGTGCTACTTTCCACAAGGAATCAT17176392CATTGCCTTCTTCAACACCACCACCACCACCATCTGGCACCAGAATTAGT
Glycine max RING finger protein (RFP1) mRNA, complete cds.
EU786799.1:498-517
CTCTTGGTGCTACTTTCCACAAGGAATCAT498CATTGCCTTCTTCAACACCACCACCACCACCATCTGGCACCAGAATTAGT
Bartonella quintana str. Toulouse, complete genome.
BX897700.1:1218510-1218529
GAACCGTATTTATTCTACCTTCATAACTAT1218510CATTGCCTTCTTCAACACCATTATCTTCTCCAACAGAAACGCCCATTCCT
Bacteroides faecium strain CBA7301 chromosome, complete genome.
CP050831.1:1095568-1095587
AGCAAGCGGTGTACCTGTTCCTATCACATC1095568CATTGCCTTCTTCAACACCAATACGAAGAACGAGCACATGATGGGACAGG
Bartonella quintana strain CO20_0321 chromosome.
CP076599.1:1217632-1217651
GAACCGTATTTATTCTACCTTCATAACTAT1217632CATTGCCTTCTTCAACACCATTATCTTCTCCAACAGAAACGCCCATTCCT
Bartonella quintana strain G1713 chromosome.
CP091504.1:1579631-1579650
GAACCGTATTTATTCTACCTTCATAACTAT1579631CATTGCCTTCTTCAACACCATTATCTNTNNNNNNNNNNNNNNNNNNNNNN
Bartonella quintana strain G1712 chromosome.
CP091505.1:1579631-1579650
GAACCGTATTTATTCTACCTTCATAACTAT1579631CATTGCCTTCTTCAACACCATTATCTNTNNNNNNNNNNNNNNNNNNNNNN

Data Export:

下記のフォーマットで最大100000件まで検索結果を取得できます。

Debug Info:

Redirect URI : https://gggenome.dbcls.jp/ja/ddbj/TGGTGTTGAAGAAGGCAATG
lang : ja | db : ddbj | k : 0 | strand : | nogap : | query_string : TGGTGTTGAAGAAGGCAATG | format : html | download : | debug : 

0.008 | 0.008 | search_start;
0.231 | 0.222 | search_plus_done; http://172.18.8.135:50400/match?q=TGGTGTTGAAGAAGGCAATG&k=0&no_gap=0&offset=0&limit=50
0.685 | 0.454 | search_minus_done; http://172.18.8.135:50400/match?q=CATTGCCTTCTTCAACACCA&k=0&no_gap=0&offset=0&limit=40
0.697 | 0.012 | cgi_end;

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