GGGenome Help | Japanese

Database:
 

Max number of mismatches/gaps mismatches : (no more than 25% of the query length)
Search for: both strand plus strand minus strand

2025-12-17 11:52:06, GGGenome : DDBJ release 138.0 (Jun, 2025)

Summary:

Results:

Matches are highlighted with blue background. Mismatches and indels are marked in red.

Brassica rapa subsp. pekinensis, pooled multiple clones, WORKING DRAFT SEQUENCE, 878 unordered pieces.
FJ789640.1:962118-962138
GATGCTGTCTTAATCATTTTTAACAAAATT962118TGGTTGCAAAATGTCACAGAATAAAAAAAATTAAATACCTATTATTTTAAT
Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrB007M04, complete sequence.
AC189209.2:27543-27563
GATGCTGTCTTAATCATTTTTAACAAAATT27543TGGTTGCAAAATGTCACAGAATAAAAAAAATTAAATACCTATTATTTTAAT
Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrB034L08, complete sequence.
AC189312.2:110836-110856
GATGCTGTCTTAATCATTTTTAACAAAATT110836TGGTTGCAAAATGTCACAGAATAAAAAAAATTAAATACCTATTATTTTAAT
Brassica napus cultivar Xiang5A chromosome 8.
CP123883.1:385711-385731
GAAGCTGTCTTAATCATTTTTAACAAAATT385711TGGTTGCAAAATGTCACAGAATAAAAAAAATTGAAATACCTATTATTTTAA
Cerastis leucographa genome assembly, chromosome: 14.
OY720359.1:1785470-1785490
AATTAAACTATGATAAATTAAAATGATTTA1785470TGGTTGCAAAATGTCACAGAACATTTCTCAATTTTTTTTTATTATTACCTG
Brassica napus cultivar Xiang5A chromosome 7.
CP151902.1:36044143-36044163
TTAAAATAATAGGTATTTCAATTTTTTTTA36044143TTCTGTGACATTTTGCAACCAAATTTTGTTAAAAATGATTAAGACAGCTTC
Brassica napus genome assembly, chromosome: A07.
HG994361.1:29005278-29005298
TTAAAATAATAGGTATTTCAATTTTTTTTA29005278TTCTGTGACATTTTGCAACCAAATTTTGTTAAAAATGATTAAGACAGCTTC
Brassica rapa genome, scaffold: A07.
LR031574.1:27886022-27886042
TTAAAATAATAGGTATTTCAATTTTTTTTA27886022TTCTGTGACATTTTGCAACCAAATTTTGTTAAAAATGATTAAGACAACATC
Brassica rapa genome assembly, chromosome: A07.
LS974623.2:28229670-28229690
TTAAAATAATAGGTATTTCAATTTTTTTTA28229670TTCTGTGACATTTTGCAACCAAATTTTGTTAAAAATGATTAAGACAACATC
Microcaecilia unicolor genome assembly, chromosome: 6.
LR594637.1:110482464-110482484
GTGAGGGAAATGGGTCTTGATATACTGCCT110482464TTCTGTGACATTTTGCAACCACATTCAAAGTGGTTTACATATATACAGGTA

Data Export:

Maximum 100000 results can be retrieved in various formats shown below:

Debug Info:

Redirect URI : https://gggenome.dbcls.jp/en/ddbj/TGGTTGCAAAATGTCACAGAA
lang : en | db : ddbj | k : 0 | strand : | nogap : | query_string : TGGTTGCAAAATGTCACAGAA | format : html | download : | debug : 

0.009 | 0.009 | search_start;
0.113 | 0.104 | search_plus_done; http://172.18.8.135:50800/match?q=TGGTTGCAAAATGTCACAGAA&k=0&no_gap=0&offset=0&limit=50
0.156 | 0.043 | search_minus_done; http://172.18.8.135:50800/match?q=TTCTGTGACATTTTGCAACCA&k=0&no_gap=0&offset=0&limit=45
0.159 | 0.003 | cgi_end;

GGGenome by @meso_cacase at DBCLS
This page is licensed under a Creative Commons Attribution 4.0 International License (CC BY 4.0).