GGGenome Help | Japanese

Database:
 

Max number of mismatches/gaps mismatches : (no more than 25% of the query length)
Search for: both strand plus strand minus strand

2025-04-05 01:50:11, GGGenome : DDBJ release 134.0 (Mar, 2024)

Summary:

Results:

Matches are highlighted with blue background. Mismatches and indels are marked in red.

Brassica rapa subsp. pekinensis, pooled multiple clones, WORKING DRAFT SEQUENCE, 882 unordered pieces.
FJ789639.1:1145311-1145332
ATATGCTTACAAAAATTCATGATTGGTAGT1145311TGTAAGTCACGTTCGGTTTGCTTAGTCTTCATCAGTTTTGAAACCTGCCAAG
Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrB023L08, complete sequence.
AC189271.2:36467-36488
ATATGCTTACAAAAATTCATGATTGGTAGT36467TGTAAGTCACGTTCGGTTTGCTTAGTCTTCATCAGTTTTGAAACCTGCCAAG
Brassica napus genome assembly, chromosome: A08.
HG994362.1:22528047-22528068
ATATGCTTACAAAAATTCATGATTGGTAGT22528047TGTAAGTCACGTTCGGTTTGCTTAGTCTTCATCAGTTTTGAAACCTGCCAAG
Brassica rapa genome, scaffold: A08.
LR031575.1:21377638-21377659
ATATGCTTACAAAAATTCATGATTGGTAGT21377638TGTAAGTCACGTTCGGTTTGCTTAGTCTTCATCAGTTTTGAAACCTGCCAAG
Brassica rapa genome assembly, chromosome: A08.
LS974624.2:27163483-27163504
ATATGCTTACAAAAATTCATGATTGGTAGT27163483TGTAAGTCACGTTCGGTTTGCTTAGTCTTCATCAGTTTTGAAACCTGCCAAG
Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrB023N08, *** SEQUENCING IN PROGRESS ***, 4 ordered pieces.
AC189273.2:151648-151669
CTTGGCAGGTTTCAAAACTGATGAAGACTA151648AGCAAACCGAACGTGACTTACAACTACCAATCATGAATTTTTGTAAGCATAT
Brassica napus cultivar Xiang5A chromosome 7.
CP123882.1:3731206-3731227
CTTGGCAGGTTTCAAAACTGATGAAGACTA3731206AGCAAACCGAACGTGACTTACAACTACCAATCATGAATTTTTGTAAGCATAT

Data Export:

Maximum 100000 results can be retrieved in various formats shown below:

Debug Info:

Redirect URI : https://gggenome.dbcls.jp/en/ddbj/TGTAAGTCACGTTCGGTTTGCT
lang : en | db : ddbj | k : 0 | strand : | nogap : | query_string : TGTAAGTCACGTTCGGTTTGCT | format : html | download : | debug : 

0.008 | 0.008 | search_start;
0.318 | 0.309 | search_plus_done; http://172.18.8.135:50400/match?q=TGTAAGTCACGTTCGGTTTGCT&k=0&no_gap=0&offset=0&limit=50
0.407 | 0.089 | search_minus_done; http://172.18.8.135:50400/match?q=AGCAAACCGAACGTGACTTACA&k=0&no_gap=0&offset=0&limit=45
0.408 | 0.001 | cgi_end;

GGGenome by @meso_cacase at DBCLS
This page is licensed under a Creative Commons Attribution 4.0 International License (CC BY 4.0).