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ミスマッチ/ギャップを許容 ミスマッチのみ許容 ： 塩基まで (検索する配列長の25%まで)
双方向を検索 ＋方向のみ検索 －方向のみ検索

2025-04-12 03:13:51, GGGenome : DDBJ release 134.0 (Mar, 2024)

Summary:

Results:

検索語に色がつきます（ミスマッチ・挿入欠失）。

000919AALA006197HT (AALA) Royal Gala 150 DAFB fruit cortex Malus domestica cDNA clone AALA006197, mRNA sequence.
CN863940.1:68-92
TTTTATTCTATCGAAAAACTTATTTAAACT68TGTCACAATTCAATTACAACCAAGCAATGGCCAAATCAAATTCCAAAACCCATGA
Mdfrt3057B04_e10016.g1 Mdfrt Malus domestica cDNA 5' similar to ref|NP_176113.1| disease resistance response protein-related/ dirigent protein-related [Arabidopsis thaliana] pir|A96615 probable dirige
GO549793.1:76-100
AATTATTTTATTGAAATACTTATATAAACT76TGTCACAATTCAATTACAACCAAGCAATGGCCAAATCAAATTCCAACACCCATGA
TSA: Pyrus x bretschneideri Unigene18954_XinShao mRNA sequence.
JR613562.1:53-77
CAAAAAGCATTCCATTAGAACATAAAACCT53TGTCACAATTCAATTACAACCAAGCAATGGCCAAATCAAATTCCAAAACCCATGA
Malus x robusta genome assembly, chromosome: 5.
OY720329.1:40454362-40454386
AATTATTTTATTGAAATACTAATATAAACT40454362TGTCACAATTCAATTACAACCAAGCAATGGCCAAATCAAATTCCAAAACCCATGA
Crataegus laevigata genome assembly, chromosome: 6.
OY756943.1:40192992-40193016
ATTTATTTTATTGAAATACTTGTATAAACT40192992TGTCACAATTCAATTACAACCAAGCAATGGCCAAATCAAATTCCAAAACCCATGA
Pyrus communis genome assembly, chromosome: 8.
OY757075.1:27034868-27034892
CGAAAAGCATTCCATTAAAACATAAAAACT27034868TGTCACAATTCAATTACAACCAAGCAATGGCCAAATCAAATTCCAAAACCCATGA
Mdfrt3042n12.y1 Mdfrt Malus domestica cDNA clone Mdfrt3042n12 5' similar to TR:Q9SS03 Q9SS03 F12P19.3, mRNA sequence.
CO576748.1:325-349
TCATGGGTTTTGGAATTTGATTTGGCCATT325GCTTGGTTGTAATTGAATTGTGACAAGTTTATATAAGTATTTCAATAAAATAATT
Mdfr3021k05.y2 Mdfr Malus domestica cDNA clone Mdfr3021k05 5' similar to TR:Q9SS03 Q9SS03 F12P19.3, mRNA sequence.
CO898221.1:286-310
TCATGGGTGTTGGAATTTGATTTGGCCATT286GCTTGGTTGTAATTGAATTGTGACAAGTTTATATAAGTATTTCAATAAAAAAAAA
030123ABLC005044HT (ABLC) Braeburn cell culture three days after subculture Malus domestica cDNA clone ABLC005044, mRNA sequence.
EB156384.1:614-638
TCATGGGTTTTGGAATTTGATTTGGCCATT614GCTTGGTTGTAATTGAATTGTGACAAGTTTATATAAGTATTTCAATAAAATAATT
Mdrtb1024K21.g1 Apple_EST_Mdrtb Malus domestica cDNA 5' similar to ref|NP_176113.1| disease resistance response protein-related/ dirigent protein-related [Arabidopsis thaliana] pir|A96615 probable dir
GO516457.1:597-621
TCATGGGTGTTGGAATTTGATTTGGCCATT597GCTTGGTTGTAATTGAATTGTGACAAGTTTATATAAGTATTTCAATAAAATAATT
TSA: Pyrus pyrifolia mRNA, contig: contig_37090.
FX406225.1:639-663
TCATGGGTTTTGGAATTTGATTTGGCCATT639GCTTGGTTGTAATTGAATTGTGACAAGTTTTTATGTTCTAATGGAATGCTTTTTG
Malus hybrid cultivar cultivar Flame chromosome 11.
CP141920.1:767129-767153
TCATGGGTTTTGGAATTTGATTTGGCCATT767129GCTTGGTTGTAATTGAATTGTGACAAGTTTATATAAGTATTTCAATAAAATAATT
Malus hybrid cultivar cultivar Flame chromosome 11.
CP141937.1:770163-770187
TCATGGGTTTTGGAATTTGATTTGGCCATT770163GCTTGGTTGTAATTGAATTGTGACAAGTTTATATAAGTATTTCAATAAAATAATT
Malus hybrid cultivar cultivar SH6 chromosome 11.
CP143368.1:776648-776672
TCATGGGCTTTGGAATTTGATTTGGCCATT776648GCTTGGTTGTAATTGAATTGTGACAAGTTTATATAAGTATTTCAATAAAATAATT
Malus hybrid cultivar cultivar SH6 chromosome 11.
CP143385.1:807518-807542
TCATGGGTTTTGGAATTTGATTTGGCCATT807518GCTTGGTTGTAATTGAATTGTGACAAGTTTATATAAGTATTTCAACAAAATAAAT
Malus domestica genome assembly, chromosome: 11.
OU744552.1:848685-848709
TCATGGGTTTTGGAATTTGATTTGGCCATT848685GCTTGGTTGTAATTGAATTGTGACAAGTTTATATAAGTATTTCAATAAAATAATT
Malus domestica genome assembly, chromosome: 11.
OU744963.1:878272-878296
TCATGGGTTTTGGAATTTGATTTGGCCATT878272GCTTGGTTGTAATTGAATTGTGACAAGTTTATATAAGTATTTCAATAAAATAATT

Data Export:

下記のフォーマットで最大100000件まで検索結果を取得できます。

Debug Info:

Redirect URI : https://gggenome.dbcls.jp/ja/ddbj/TGTCACAATTCAATTACAACCAAGC
lang : ja | db : ddbj | k : 0 | strand : | nogap : | query_string : TGTCACAATTCAATTACAACCAAGC | format : html | download : | debug : 

0.009 | 0.009 | search_start;
0.452 | 0.443 | search_plus_done; http://172.18.8.135:50400/match?q=TGTCACAATTCAATTACAACCAAGC&k=0&no_gap=0&offset=0&limit=50
0.737 | 0.285 | search_minus_done; http://172.18.8.135:50400/match?q=GCTTGGTTGTAATTGAATTGTGACA&k=0&no_gap=0&offset=0&limit=44
0.745 | 0.008 | cgi_end;

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