GGGenome Help | Japanese

Database:
 

Max number of mismatches/gaps mismatches : (no more than 25% of the query length)
Search for: both strand plus strand minus strand

2025-12-19 07:09:17, GGGenome : DDBJ release 138.0 (Jun, 2025)

Summary:

Results:

Matches are highlighted with blue background. Mismatches and indels are marked in red.

Brassica napus cultivar Xiang5A chromosome 16.
CP123891.1:61159746-61159765
CGCTGACGGATGAGTGTTATTCATCGTTTT61159746TGTCACGTTCCGGTTTGTTATGTGGCCAACAAATACTCCAAATCAGACTC
Herminia tarsipennalis genome assembly, chromosome: 13.
OX243843.2:1292971-1292990
GGGTTTGTATATCGATTTATTATTTGTGGG1292971TGTCACGTTCCGGTTTGTTATATGGTTCCGAATGCTGGATCACGAAAAGG
Brassica napus cultivar Xiang5A chromosome 4.
CP123879.1:6554421-6554440
AGTTCTGATTTGGAGTAATTGTTGGCCACA6554421TAACAAACCGGAACGTGACAAAACCGATGAATACACACTCATCTGTCAGC
Brassica napus cultivar Xiang5A chromosome 9.
CP151904.1:6170906-6170925
AGTTCTGATTTGGAGTAATTGTTGGCCACA6170906TAACAAACCGGAACGTGACAAAACCGATGAATACACACTCATCTGTCAGC
Brassica napus cultivar Xiang5A chromosome 19.
CP151914.1:7391462-7391481
GAGTCTGATTTGGAGTATTTGTTGGCCACA7391462TAACAAACCGGAACGTGACAAAAACGATGAATAACACTCATCCGTCAGCG
Brassica napus genome assembly, chromosome: A09.
HG994363.1:5925537-5925556
AGTTCTGATTTGGAGTAATTGTTGGCCACA5925537TAACAAACCGGAACGTGACAAAACCGATGAATACACACTCATCTGTCAGC
Brassica napus genome assembly, chromosome: C09.
HG994373.1:7936919-7936938
GAGTCTGATTTGGAGTATTTGTTGGCCACA7936919TAACAAACCGGAACGTGACAAAAACGATGAATAACACTCATCCGTCAGCG
Brassica rapa genome, scaffold: A09.
LR031568.1:6038160-6038179
AGTTCTGATTTGGAGTAATTGTTGGCCACA6038160TAACAAACCGGAACGTGACAAAACCGATGAATACACACACACTCATCTGT
Brassica oleracea HDEM genome, scaffold: C9.
LR031875.1:7937997-7938016
GAGTCTGATTTGGAGTAATTGTTGGCCACA7937997TAACAAACCGGAACGTGACAAAAACGATGAATAACACTCATCCGTCAGCG
Brassica rapa genome assembly, chromosome: A09.
LS974625.2:6240485-6240504
AGTTCTGATTTGGAGTAATTGTTGGCCACA6240485TAACAAACCGGAACGTGACAAAACCGATGAATACACACACACTCATCTGT
Sepiola affinis genome assembly, chromosome: 3.
OZ202512.1:75430056-75430075
ACTTTGCAGCACATGCACTCGTTGGTGATT75430056TAACAAACCGGAACGTGACATATATACTAAATTACAAGCTTAGCATGTAT

Data Export:

Maximum 100000 results can be retrieved in various formats shown below:

Debug Info:

Redirect URI : https://gggenome.dbcls.jp/en/ddbj/TGTCACGTTCCGGTTTGTTA
lang : en | db : ddbj | k : 0 | strand : | nogap : | query_string : TGTCACGTTCCGGTTTGTTA | format : html | download : | debug : 

0.009 | 0.009 | search_start;
0.092 | 0.083 | search_plus_done; http://172.18.8.135:50800/match?q=TGTCACGTTCCGGTTTGTTA&k=0&no_gap=0&offset=0&limit=50
0.128 | 0.037 | search_minus_done; http://172.18.8.135:50800/match?q=TAACAAACCGGAACGTGACA&k=0&no_gap=0&offset=0&limit=48
0.135 | 0.006 | cgi_end;

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