GGGenome Help | Japanese

Database:
 

Max number of mismatches/gaps mismatches : (no more than 25% of the query length)
Search for: both strand plus strand minus strand

2025-04-04 08:47:19, GGGenome : DDBJ release 134.0 (Mar, 2024)

Summary:

Results:

Matches are highlighted with blue background. Mismatches and indels are marked in red.

Malus x robusta genome assembly, chromosome: 12.
OY720336.1:16964657-16964676
TGGAACAGATCTATACCGCAGCCCATGTAA16964657TGTCATCGCCAGAACAAGAGAGACAACATCAAAACCCTCACTTGGCACAG
Vibrio syngnathi strain K08M4 chromosome 2, complete sequence.
CP017917.1:21143-21162
AGATACAAGGCCAAGTACTGAGCTGTCTGG21143TGTCATCGCCAGAACAAGAGCAACAAGAGAAATTAGAATAACAGCGAAAC
Dioctria linearis genome assembly, chromosome: 2.
OZ005741.1:118796127-118796146
GTCCAGAAACGCCATAGTATATCTTACAGT118796127TGTCATCGCCAGAACAAGAGTCTTGTCTTAGACGTTGCAGTGTTAACAAG
Malus hybrid cultivar cultivar Flame chromosome 1.
CP141910.1:16329827-16329846
CTGTGCCAAGTGAGGGTTTTGATGTTGTCT16329827CTCTTGTTCTGGCGATGACATTACATGGGCTGCGGTATAGATCTGTTCCA
Malus hybrid cultivar cultivar Flame chromosome 1.
CP141927.1:16692654-16692673
CTGTGCCAAGTGAGGGTTTTGATGTTGTCT16692654CTCTTGTTCTGGCGATGACATTACATGGGCTGCGGTATAGATCTGTTCCA
Malus hybrid cultivar cultivar Royalty chromosome 1.
CP141970.1:16514840-16514859
CTGTGCCAAGTGAGGGTTTTGATGTTGTCT16514840CTCTTGTTCTGGCGATGACATTACATGGGCTGCGGTATAGATCTGTTCCA
Malus hybrid cultivar cultivar SH6 chromosome 1.
CP143358.1:16295406-16295425
CTTTGCCAAGTGAGGGTTTTGATGTTGTCT16295406CTCTTGTTCTGGCGATGACATTACATGGGCTGCGGTATAGATCTGTTCCA
Malus domestica genome assembly, chromosome: 1.
OU696677.1:13033925-13033944
CTTTGCCAAGTGAGGGTTTTGATGTTGTCT13033925CTCTTGTTCTGGCGATGACATTACATGGGCTGCGGTATAGATCTGTTCCA
Malus domestica genome assembly, chromosome: 1.
OU744542.1:16834352-16834371
CTGTGCCAAGTGAGGGTTTTGATGTTGTCT16834352CTCTTGTTCTGGCGATGACATTACATGGGCTGCGGTATAGATCTGTTCCA
Malus domestica genome assembly, chromosome: 1.
OU744953.1:16167861-16167880
CTGTGCCAAGTGAGGGTTTTGATGTTGTCT16167861CTCTTGTTCTGGCGATGACATTACATGGGCTGCGGTATAGATCTGTTCCA
Malus domestica genome assembly, chromosome: 1.
OU744991.1:13012452-13012471
CTTTGCCAAGTGAGGGTTTTGATGTTGTCT13012452CTCTTGTTCTGGCGATGACATTACATGGGCTGCGGTATAGATCTGTTCCA
Vibrio atlanticus CECT 7223 DNA, chromosome 2, complete sequence.
AP025461.1:329832-329851
GTTTCGCGGTTATTCTAATTTCTCTTGTTG329832CTCTTGTTCTGGCGATGACACCAGACAGCTCAGTACTTGGCCTTGTATCT
Vibrio tasmaniensis LMG 20012 DNA, chromosome 2, complete sequence.
AP025511.1:629818-629837
GTTTCGCTGTTATTCTAATTTCTCTTGTTG629818CTCTTGTTCTGGCGATGACACCAGACAGCTCAGTACTTGGCCTTGTATCT
Vibrio sp. SNU_ST1 chromosome 2, complete sequence.
CP130749.1:29533-29552
GTTTCGCGGTTATTCTAATTTCTCTTGTTG29533CTCTTGTTCTGGCGATGACACCAGACAGCTCAGTACTTGGCCTTGTATCT

Data Export:

Maximum 100000 results can be retrieved in various formats shown below:

Debug Info:

Redirect URI : https://gggenome.dbcls.jp/en/ddbj/TGTCATCGCCAGAACAAGAG
lang : en | db : ddbj | k : 0 | strand : | nogap : | query_string : TGTCATCGCCAGAACAAGAG | format : html | download : | debug : 

0.009 | 0.009 | search_start;
0.093 | 0.085 | search_plus_done; http://172.18.8.135:50400/match?q=TGTCATCGCCAGAACAAGAG&k=0&no_gap=0&offset=0&limit=50
0.112 | 0.019 | search_minus_done; http://172.18.8.135:50400/match?q=CTCTTGTTCTGGCGATGACA&k=0&no_gap=0&offset=0&limit=47
0.120 | 0.007 | cgi_end;

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