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ミスマッチ/ギャップを許容 ミスマッチのみ許容 ： 塩基まで (検索する配列長の25%まで)
双方向を検索 ＋方向のみ検索 －方向のみ検索

2025-04-03 11:36:36, GGGenome : DDBJ release 134.0 (Mar, 2024)

Summary:

Results:

検索語に色がつきます（ミスマッチ・挿入欠失）。

Malus hybrid cultivar cultivar Flame chromosome 16.
CP141942.1:2956000-2956021
ATAATGGACAGCCTAATTTAGTATCCAATT2956000TGTCATTCACGAGATTTGAACCTAAGACCTCTTACTTCCAAGTGAAGAAGAA
Malus hybrid cultivar cultivar SH6 chromosome 8.
CP143365.1:20948399-20948420
GTCAGGGGTAGAACAAATTGATATTGAATT20948399TGTCATTCACGAGATTTGAACCTAAAACTTCTTATTAAGTGACCCTGATAAA
Malus hybrid cultivar cultivar SH6 chromosome 15.
CP143372.1:46568199-46568220
GGGAATGAGGAAACAAATTGTTATTAAACT46568199TGTCATTCACGAGATTTGAACCTAAGACATCTCACTTACTAATGAAACGTCA
Malus hybrid cultivar cultivar SH6 chromosome 16.
CP143373.1:2990884-2990905
ATAATGGACAGCCTAATTTAGTATCCAATT2990884TGTCATTCACGAGATTTGAACCTAAGACCTCTTACTTCCAAGTGAAGAAGAA
Malus sylvestris genome assembly, chromosome: 8.
OU696510.1:20383137-20383158
CTATGAGGTAGAACAAATTGATATTGAATT20383137TGTCATTCACGAGATTTGAACCTAAAACTTCTTATTAAGTGACCCTGATAAA
Malus domestica genome assembly, chromosome: 8.
OU696684.1:20052270-20052291
CTATGGGGTAGAACAAATTGATATTGAATT20052270TGTCATTCACGAGATTTGAACCTAAAACTTCTTATTAAGTGACCCTGATAAA
Malus domestica genome assembly, chromosome: 15.
OU696691.1:46432183-46432204
GGGAATGAGGAAACAAATTGTTATTAAACT46432183TGTCATTCACGAGATTTGAACCTAAGACATCTCACTTACTAATGAAACGTCA
Malus domestica genome assembly, chromosome: 16.
OU696692.1:2986933-2986954
ATAATGGACAGTCTAATTTAGTATCCAATT2986933TGTCATTCACGAGATTTGAACCTAAGACCTCTTACTTCAAAGTGAAGAAGAA
Malus domestica genome assembly, chromosome: 8.
OU744549.1:20516331-20516352
CTATGGGGTAGAACAAATTGATATTGAATT20516331TGTCATTCACGAGATTTGAACCTAAAACTTCTTATTAAGTGACCCTGATAAA
Malus domestica genome assembly, chromosome: 12.
OU744553.1:10326827-10326848
GGGGCAGGTGAAATAAATTGGTATGAAACA10326827TGTCATTCACGAGATTTGAACCGAAACTTTATAGGCTTGGATGCTTTCAGTG
Malus domestica genome assembly, chromosome: 16.
OU744557.1:2990069-2990090
ATAATGGACAGTCTAATTTAGTATCCAATT2990069TGTCATTCACGAGATTTGAACCTAAGACCTCTTACTTCAAAGTGAAGAAGAA
Malus domestica genome assembly, chromosome: 8.
OU744960.1:20008300-20008321
GTCAGGGGTAGAACAAATTGATATTGAATT20008300TGTCATTCACGAGATTTGAACCTAAAACTTCTTATTAAGTGACCCTGATAAA
Malus domestica genome assembly, chromosome: 16.
OU744968.1:2974239-2974260
ATAATGGACAGCCTAATTTAGTATCCAATT2974239TGTCATTCACGAGATTTGAACCTAAGACCTCTTACTTCCAAGTGAAGAAGAA
Malus domestica genome assembly, chromosome: 8.
OU744998.1:20517459-20517480
GTCAGGGGTAGAACAAATTGATATTGAATT20517459TGTCATTCACGAGATTTGAACCTAAAACTTCTTATTAAGTGACCCTGATAAA
Malus domestica genome assembly, chromosome: 16.
OU745006.1:3000291-3000312
ATAATGGACAGTCTAATTTAGTATCCAATT3000291TGTCATTCACGAGATTTGAACCTAAGACCTCTTACTTCAAAGTGAAGAAGAA
Malus x robusta genome assembly, chromosome: 3.
OY720327.1:3365521-3365542
ATAATGGACAGTCTAATTTAGTATCCAATT3365521TGTCATTCACGAGATTTGAACCTAAGACCTCTTACTTCAAAGTGAAGAAGAA
Malus x robusta genome assembly, chromosome: 5.
OY720329.1:21738034-21738055
ATAATTACATAAATAAATTGATATCGAACT21738034TGTCATTCACGAGATTTGAACCTAAAAATTTTCATTAACAAACAAAAAAAAA
Malus x robusta genome assembly, chromosome: 16.
OY720340.1:20780562-20780583
CTATGGGGTAGAACAAATTGATATTGAATT20780562TGTCATTCACGAGATTTGAACCTAAAACTTCTTATTAAGCGACCCTGATAAA
Malus hybrid cultivar cultivar Flame chromosome 8.
CP141917.1:28563511-28563532
TTCTTTTTCACTTAAAAGTGAGAGATATTA28563511GGTTCAAATCTCGTGAATGACAAATTCGATACCAAATTAGACTAGTTTAACC
Malus hybrid cultivar cultivar Flame chromosome 11.
CP141920.1:18959475-18959496
TTTTTTTTTGTTTGTAAATGAAAATTTTTA18959475GGTTCAAATCTCGTGAATGACAAATTCGATATCAATTTATTTATGTAATTAT
Malus hybrid cultivar cultivar Flame chromosome 8.
CP141934.1:10184688-10184709
TTTATCAGGGTCACTTAATAAGAAGTTTTA10184688GGTTCAAATCTCGTGAATGACAAATTCAATATCAATTTGTTCTACCCCTGAC
Malus hybrid cultivar cultivar Flame chromosome 11.
CP141937.1:20112990-20113011
TTTTTTTTTATTTGTAAATGAAAATTTTTA20112990GGTTCAAATCTCGTGAATGACAAATTCGATATCAATTTATTTATGTAATTAT
Malus hybrid cultivar cultivar Royalty chromosome 11.
CP141963.1:19463037-19463058
TTTTTTTTTTGTTTGTAAATGAAAATTTTA19463037GGTTCAAATCTCGTGAATGACAAATTCGATATCAATTTATTTATATAATTAT
Malus hybrid cultivar cultivar Royalty chromosome 11.
CP141980.1:20350873-20350894
TTTTTTTTTGTTTGTTAATGAAAATTTTTA20350873GGTTCAAATCTCGTGAATGACAAGTTCGATATCAATTTATTTATGTAATTAT
Malus hybrid cultivar cultivar SH6 chromosome 3.
CP143360.1:27889237-27889258
GGTATTCCTCTTCACTTGCAAGAGATTTGA27889237GGTTCAAATCTCGTGAATGACAAATTCGATACCAAATTAGGTTGCTCTTTGT
Malus hybrid cultivar cultivar SH6 chromosome 11.
CP143368.1:19415595-19415616
TTTTTTTTTGTTTGTTAATGAAAATTTTTA19415595GGTTCAAATCTCGTGAATGACAAGTTCGATATCAATTTATTTATGTAATTAT
Malus sylvestris genome assembly, chromosome: 11.
OU696513.1:19498800-19498821
TTTTTTTTTATTTGTAAATGAAAATTTTTA19498800GGTTCAAATCTCGTGAATGACAAATTCGATATCAATTTATTTATGTAATTAT
Malus domestica genome assembly, chromosome: 11.
OU744552.1:20082913-20082934
TTTTTTTTTATTTGTAAATGAAAATTTTTA20082913GGTTCAAATCTCGTGAATGACAAATTCGATATCAATTTATTTATGTAATTAT
Malus domestica genome assembly, chromosome: 3.
OU744955.1:27651224-27651245
GGTATTCCTCTTCACTTGCAAGAGATTTGA27651224GGTTCAAATCTCGTGAATGACAAATTCGATACCAAATTAGGTTGCTCTTTGT
Malus domestica genome assembly, chromosome: 11.
OU744963.1:19848130-19848151
TTTTTTTTTATTTGTAAATGAAAATTTTTA19848130GGTTCAAATCTCGTGAATGACAAATTCGATATCAATTTATTTATGTAATTAT
Pyrus communis genome assembly, chromosome: 5.
OY757072.1:1528654-1528675
TCCCTCTACACTTCCAAGGAAAAGGTCTTA1528654GGTTCAAATCTCGTGAATGACAAGTTCGATACCAATTTATTTTTCACTCCTT

Data Export:

下記のフォーマットで最大100000件まで検索結果を取得できます。

Debug Info:

Redirect URI : https://gggenome.dbcls.jp/ja/ddbj/TGTCATTCACGAGATTTGAACC
lang : ja | db : ddbj | k : 0 | strand : | nogap : | query_string : TGTCATTCACGAGATTTGAACC | format : html | download : | debug : 

0.009 | 0.009 | search_start;
0.341 | 0.332 | search_plus_done; http://172.18.8.135:50400/match?q=TGTCATTCACGAGATTTGAACC&k=0&no_gap=0&offset=0&limit=50
0.453 | 0.112 | search_minus_done; http://172.18.8.135:50400/match?q=GGTTCAAATCTCGTGAATGACA&k=0&no_gap=0&offset=0&limit=32
0.461 | 0.008 | cgi_end;

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