GGGenome Help | Japanese

Database:
 

Max number of mismatches/gaps mismatches : (no more than 25% of the query length)
Search for: both strand plus strand minus strand

2025-04-05 05:11:36, GGGenome : DDBJ release 134.0 (Mar, 2024)

Summary:

Results:

Matches are highlighted with blue background. Mismatches and indels are marked in red.

Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrB049D17, *** SEQUENCING IN PROGRESS ***, 2 ordered pieces.
AC189377.2:62350-62371
AAAAAATGTATTGATTGTTGTTGCGCTTTC62350TGTCTCTCGCTCATTCATCCAAAAACAAATATTCCTGACACTCTCTCTCTCT
Raphanus sativus genome assembly, chromosome: 5.
OY743211.1:43939187-43939208
AAATGTATAATTAGTGTTTTTTGCGCTTTC43939187TGTCTCTCGCTCATTCATCCAAACAAATATTCCTGACACACACTCTCTCTCT
TSA: Brassica rapa subsp. pekinensis RNA, contig: CF3_2987.
FX701091.1:1358-1379
AGAGAGAGAGAGTGTCAGGAATATTTGTTT1358TTGGATGAATGAGCGAGAGACAGAAAGCGC
Brassica rapa subsp. pekinensis, pooled multiple clones, WORKING DRAFT SEQUENCE, 878 unordered pieces.
FJ789640.1:523890-523911
GAGAGAGAGAGTGTCAGGAATATTTGTTTT523890TTGGATGAATGAGCGAGAGACAGAAAGCGCAACAACAATCAATACATTTTTT
Brassica napus cultivar Xiang5A chromosome 3.
CP123878.1:15144765-15144786
AGAGAGAGAGAGTGTCAGGAATATTTGTTT15144765TTGGATGAATGAGCGAGAGACAGAAAGCGCAACAACAATCAATACATTTTTT
Brassica napus genome assembly, chromosome: A03.
HG994357.1:15027315-15027336
AGAGAGAGAGAGTGTCAGGAATATTTGTTT15027315TTGGATGAATGAGCGAGAGACAGAAAGCGCAACAACAATCAATACATTTTTT
Brassica rapa genome, scaffold: A03.
LR031572.1:14775909-14775930
AGAGAGAGAGAGTGTCAGGAATATTTGTTT14775909TTGGATGAATGAGCGAGAGACAGAAAGCGCAACAACAATCAATACATTTTTT
Raphanus sativus genome assembly, chromosome: 4.
LR778313.1:93761-93782
AGAGAGAGAGTGTGTGTCAGGAATATTTGT93761TTGGATGAATGAGCGAGAGACAGAAAGCGCAAAAAACACTAATTATACATTT
Brassica rapa genome assembly, chromosome: A03.
LS974619.2:14902045-14902066
AGAGAGAGAGAGTGTCAGGAATATTTGTTT14902045TTGGATGAATGAGCGAGAGACAGAAAGCGCAACAACAATCAATACATTTTTT

Data Export:

Maximum 100000 results can be retrieved in various formats shown below:

Debug Info:

Redirect URI : https://gggenome.dbcls.jp/en/ddbj/TGTCTCTCGCTCATTCATCCAA
lang : en | db : ddbj | k : 0 | strand : | nogap : | query_string : TGTCTCTCGCTCATTCATCCAA | format : html | download : | debug : 

0.009 | 0.009 | search_start;
0.321 | 0.312 | search_plus_done; http://172.18.8.135:50400/match?q=TGTCTCTCGCTCATTCATCCAA&k=0&no_gap=0&offset=0&limit=50
0.446 | 0.124 | search_minus_done; http://172.18.8.135:50400/match?q=TTGGATGAATGAGCGAGAGACA&k=0&no_gap=0&offset=0&limit=48
0.451 | 0.005 | cgi_end;

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