GGGenome Help | English

データベース：
 

ミスマッチ/ギャップを許容 ミスマッチのみ許容 ： 塩基まで (検索する配列長の25%まで)
双方向を検索 ＋方向のみ検索 －方向のみ検索

2025-04-03 15:10:18, GGGenome : DDBJ release 134.0 (Mar, 2024)

Summary:

Results:

検索語に色がつきます（ミスマッチ・挿入欠失）。

Sphaeramia orbicularis genome assembly, chromosome: 10.
LR597467.1:43468306-43468325
TTATTGCCTGCCACGCCCCAGGGGAGAATC43468306TGTCTGTTGTTTCCAGGTATGCAGGAATGGATAACATTAACAACTTAACC
Spodoptera exigua genome assembly, chromosome: 15.
LR824616.2:8758173-8758192
GTAGATTTTAAAGTATAATTTTGTTTAACA8758173TGTCTGTTGTTTCCAGGTATCAACAGGGAACAAGCGTTGGCTCGTCCAAT
Bombus hypnorum genome assembly, chromosome: 8.
OU427027.1:7676534-7676553
GCCGTAGGACCTGAACGTGGTACATACTTT7676534TGTCTGTTGTTTCCAGGTATCGTTCTCAATTCGTCAGAGAAATTCGACCT
Australolacerta australis isolate ABU5 recombination activation protein 2 (RAG2) gene, partial cds.
JX963047.1:863-882
GATATGGGAAATGGAGCCATACTATTTGGT863ATACCTGGAAACAACAGACAGCTAATTTCAGATGCTAACTACTTTTACTT
EST3248 Tender roots cDNA library of tea plant Camellia sinensis cDNA clone 08012802-OUYI_CHAG_39_34.M13+_B05, mRNA sequence.
GE652921.1:219-238
GTGCTGTTGACGCCGGGACTGCTGTTCCAG219ATACCTGGAAACAACAGACATGTGGAGTTTGGGAGCATGAAGACTAACGG
TSA: Camellia sinensis tea_c18827 mRNA sequence.
KA297948.1:183-202
GTGCTGTTGACGCCGGGACTGCTGTTCCAG183ATACCTGGAAACAACAGACATGTGGAGTTTGGGAGTCATGAAGACTAACG

Data Export:

下記のフォーマットで最大100000件まで検索結果を取得できます。

Debug Info:

Redirect URI : https://gggenome.dbcls.jp/ja/ddbj/TGTCTGTTGTTTCCAGGTAT
lang : ja | db : ddbj | k : 0 | strand : | nogap : | query_string : TGTCTGTTGTTTCCAGGTAT | format : html | download : | debug : 

0.009 | 0.009 | search_start;
0.209 | 0.201 | search_plus_done; http://172.18.8.135:50400/match?q=TGTCTGTTGTTTCCAGGTAT&k=0&no_gap=0&offset=0&limit=50
0.394 | 0.185 | search_minus_done; http://172.18.8.135:50400/match?q=ATACCTGGAAACAACAGACA&k=0&no_gap=0&offset=0&limit=47
0.396 | 0.002 | cgi_end;

GGGenome by @meso_cacase at DBCLS
This page is licensed under a Creative Commons Attribution 4.0 International License (CC BY 4.0).