GGGenome | Results

Matches are highlighted with blue background. Mismatches and in~~dels~~ are marked in red.

Brassica oleracea var. viridis mRNA, clone: KALE-025I01, 5' end sequence.
DK465298.1:176-201

CATCGAGAGCGCCATTAAGAAGAATGAAAG176TGTGAATGGGCATTACAAGAACGTCAAGTTTATGTGTGCTGATGTGACATCTCCAG

Brassica oleracea var. viridis mRNA, clone: KALE-070A12, 5' end sequence.
DK482320.1:228-253

CATCGAGAGCGCCATTAAGAAGAATGAAAG228TGTGAATGGGCATTACAAGAACGTCAAGTTTATGTGTGCTGATGTGACATCTCCAG

Brassica oleracea var. viridis mRNA, clone: KALE-070M11, 5' end sequence.
DK482607.1:228-253

CATCGAGAGCGCCATTAAGAAGAATGAAAG228TGTGAATGGGCATTACAAGAACGTCAAGTTTATGTGTGCTGATGTGACATCTCCAG

Brassica oleracea var. viridis mRNA, clone: KALE-152P07, 5' end sequence.
DK514032.1:483-508

CATCGAGAGCGCCATTAAGAAGAATGAAAG483TGTGAATGGGCATTACAAGAACGTCAAGTTTATGTGTGCTGATGTGACATCTCCAG

BNSCS2CT_UP_035_G08_07JAN2005_052 Brassica napus seed coat BNSCS2CT Brassica napus cDNA 5', mRNA sequence.
EE464970.1:252-277

CATCGAAAGCGCCATTAAGAAGAATGAAAG252TGTGAATGGGCATTACAAGAACGTCAAGTTTATGTGCGCTGATGTGACATCTCCAG

BNARO2GH_T3_010_D02_15DEC2006_010 Brassica napus BNARO2GH Brassica napus cDNA 5', mRNA sequence.
ES911450.1:88-113

CATCGAGAGCGCCATTAAGAAGAATGAAAG88TGTGAATGGGCATTACAAGAACGTCAAGTTTATGTGTGCTGATGTGACATCTCCAG

0131282 Brassica napus Root library Brassica napus cDNA, mRNA sequence.
EV125970.1:281-306

CATCGAGAGCGCCATTAAGAAGAATGAAAG281TGTGAATGGGCATTACAAGAACGTCAAGTTTATGTGTGCTGATGTGACATCTCCAG

0101235 Brassica napus Cold acclimation - light Brassica napus cDNA, mRNA sequence.
EV200082.1:311-336

CATCGAAAGCGCCATTAAGAAGAATGAAAG311TGTGAATGGGCATTACAAGAACGTCAAGTTTATGTGCGCTGATGTGACATCTCCAG

RS3D089TF RS3(RT) Raphanus sativus cDNA 5', mRNA sequence.
EY946179.1:204-229

CATCGAAAGCGCCATTAAAAAGAACGAAAG204TGTGAATGGGCATTACAAGAACGTCAAGTTTATGTGTGCTGATGTGACATCTCCAG

RR3EI93TF RR3(NY) Raphanus raphanistrum subsp. raphanistrum cDNA 5', mRNA sequence.
FD548394.1:477-502

CATCGAAAGCGCTATTAAAAAGAATGAAAG477TGTGAATGGGCATTACAAGAACGTCAAGTTTATGTGTGCTGATGTGACATCTCCAG

RS3G845TF RS3(RT) Raphanus sativus cDNA 5', mRNA sequence.
FD955391.1:251-276

CATCGAAAGCGCCATTAAAAAGAACGAAAG251TGTGAATGGGCATTACAAGAACGTCAAGTTTATGTGTGCTGATGTGACATCTCCAG

Raphanus sativus mRNA, clone: RSCR05B19, 5' end sequence.
FY441201.1:181-206

CATCGAAAGCGCTATTAAAAAGAATGAAAG181TGTGAATGGGCATTACAAGAACGTCAAGTTTATGTGTGCTGATGTGACATCTCCAG

BOICS16TR BO_1.4_1.6_KB_nuc Brassica oleracea genomic clone BOICS16, genomic survey sequence.
CC951601.1:37-62

GGTGATGTTTGTGCTTTTGTAGAATGAAAG37TGTGAATGGGCATTACAAGAACGTCAAGTTTATGTGTGCTGATGTGACATCTCCAG

Brassica rapa subsp. pekinensis clone KBrH022J23, complete sequence.
FP236661.1:12103-12128

TTCTTTGGTGATGCTGTTGTAGAATGAAAG12103TGTGAATGGGCATTACAAGAACGTCAAGTTTATGTGCGCTGATGTGACATCTCCAG

Brassica napus cultivar Xiang5A chromosome 12.
CP123887.1:7266370-7266395

TGGTGATGTTGTGCTCTTGTAGAATGAAAG7266370TGTGAATGGGCATTACAAGAACGTCAAGTTTATGTGTGCTGATGTGACATCTCCAG

Brassica napus genome assembly, chromosome: C06.
HG994370.1:6646592-6646617

TGGTGATGTTGTGCTCTTGTAGAATGAAAG6646592TGTGAATGGGCATTACAAGAACGTCAAGTTTATGTGTGCTGATGTGACATCTCCAG

Brassica oleracea HDEM genome, scaffold: C6.
LR031880.1:3593289-3593314

GGTGATGTTTGTGCTCTTGTAGAATGAAAG3593289TGTGAATGGGCATTACAAGAACGTCAAGTTTATGTGTGCTGATGTGACATCTCCAG

Raphanus sativus genome assembly, chromosome: 1.
OY743207.1:28561010-28561035

AGTTTCTTTGGTGATGTTGTAGAATGAAAG28561010TGTGAATGGGCATTACAAGAACGTCAAGTTTATGTGTGCTGATGTGACATCTCCAG

Barbarea vulgaris genome assembly, chromosome: 7.
OY763893.1:6738750-6738775

TTTCTTTCTTTCTTTCTTGTAGAATGAAAG6738750TGTGAATGGGCATTACAAGAACGTCAAGTTTATGTGTGCGGATGTTACATCACCTG

Raphanus sativus mRNA, clone: RSCL13P20, 5' end sequence.
FY437508.1:130-155

CTGGAGATGTCACATCAGCACACATAAACT130TGACGTTCTTGTAATGCCCATTCACACTTTCATTCTTTTTAATAGCGCTTTCGATG

TSA: Raphanus sativus var. sativus RNA, contig: WG3_13169.
FX658422.1:1256-1281

CTGGAGATGTCACATCAGCACACATAAACT1256TGACGTTCTTGTAATGCCCATTCACACTTTCATTCTTTTTAATAGCGCTTTCGATG

TSA: Brassica rapa subsp. pekinensis RNA, contig: CF3_15238.
FX697052.1:1209-1234

CTGGAGATGTCACATCAGCGCACATAAACT1209TGACGTTCTTGTAATGCCCATTCACACTTTCATTCTTCTTAATGGCGCTTTCGATG

TSA: Brassica rapa x Raphanus sativus RNA, contig: BB3_33199.
FX732413.1:1011-1036

CAGGAGATGTCACATCAGCACACATAAACT1011TGACGTTCTTGTAATGCCCATTCACACTTTCATTCTTCTTAATGGCGCTCTCGATG

TSA: Brassica rapa x Raphanus sativus RNA, contig: BB3_18921.
FX734315.1:1011-1036

CTGGAGATGTCACATCAGCACACATAAACT1011TGACGTTCTTGTAATGCCCATTCACACTTTCATTCTTTTTAATAGCGCTTTCGATG

TSA: Raphanus sativus RS11164 mRNA sequence.
JT795711.1:1171-1196

CTGGAGATGTCACATCAGCACACATAAACT1171TGACGTTCTTGTAATGCCCATTCACACTTTCGTTCTTTTTAATGGCGCTTTCGATG

Brassica napus cultivar Xiang5A chromosome 10.
CP123885.1:3802610-3802635

CAGGAGATGTCACATCAGCACACATAAACT3802610TGACGTTCTTGTAATGCCCATTCACACTTTCATTCTACAACAACATCACCAAAGAA

Brassica napus genome assembly, chromosome: A06.
HG994360.1:2785051-2785076

CTGGAGATGTCACATCAGCGCACATAAACT2785051TGACGTTCTTGTAATGCCCATTCACACTTTCATTCTACAACAGCATCACCAAAGAA

Brassica rapa genome, scaffold: A06.
LR031569.1:2730066-2730091

CTGGAGATGTCACATCAGCGCACATAAACT2730066TGACGTTCTTGTAATGCCCATTCACACTTTCATTCTACAACAGCATCACCAAAGAA

Raphanus sativus genome assembly, chromosome: 7.
LR778316.1:4601143-4601168

CTGGAGATGTCACATCAGCACACATAAACT4601143TGACGTTCTTGTAATGCCCATTCACACTTTCATTCTACAACATCACCAAAGAAACT

Brassica rapa genome assembly, chromosome: A06.
LS974622.2:2832863-2832888

CTGGAGATGTCACATCAGCGCACATAAACT2832863TGACGTTCTTGTAATGCCCATTCACACTTTCATTCTACAACAGCATCACCAAAGAA

Data Export:

Tab-delimited text: Open in new window | Download
You can copy-paste the result into spreadsheet softwares (e.g. Excel) or text editors.
CSV format: Open in new window | Download
You can open CSV files using spreadsheet softwares (e.g. Excel) or text editors.
BED format: Link | Download
GFF format: Link | Download
JSON format: Link | Download

Debug Info:

0.009 | 0.009 | search_start;
0.804 | 0.795 | search_plus_done; http://172.18.8.135:50400/match?q=TGTGAATGGGCATTACAAGAACGTCA&k=0&no_gap=0&offset=0&limit=50
0.995 | 0.191 | search_minus_done; http://172.18.8.135:50400/match?q=TGACGTTCTTGTAATGCCCATTCACA&k=0&no_gap=0&offset=0&limit=30
1.003 | 0.008 | cgi_end;

Summary:

Results:

Data Export:

Debug Info: