GGGenome Help | Japanese

Database:
 

Max number of mismatches/gaps mismatches : (no more than 25% of the query length)
Search for: both strand plus strand minus strand

2025-04-05 03:27:02, GGGenome : DDBJ release 134.0 (Mar, 2024)

Summary:

Results:

Matches are highlighted with blue background. Mismatches and indels are marked in red.

Gossypium herbaceum isolate Zhongcao1 chromosome 10.
CP106689.1:118933015-118933039
AACCTTATCAATGCATTCCTTACATACAAA118933015TGTGACCTTAAGACAGCCTAAAACCCAATGAAATCCTACATAAAACTCGAAAATT
Gossypium bickii isolate GPG1lz chromosome 10.
CP106713.1:131887671-131887695
AACCTTATCAATGCATTCCTTACATACAAA131887671TGTGACCTTAAGACAGCCTAAAACCCGATGAAATCCTACATAAACCTCGAAAATT
Gossypium rotundifolium isolate GPK201 chromosome 10.
CP106731.1:2557728-2557752
AACCTTATCAATGCATTCCTTACATACAAA2557728TGTGACCTTAAGACAGCCTAAAACCCGATGAAATCCTACATAAAACTCGAAAATT
Gossypium hirsutum chromosome 10 SNP marker NG0203671 associated with blue disease resistance genomic sequence.
GU265861.1:203-227
AACCTTATCAATGCATTCCTTACATACAAA203TGTGACCTTAAGACAGCCTAAAACCCNATGAAATCCTACACAAAACTCGAAAATT
Gossypioides kirkii chromosome KI_10.
CP032252.1:555143-555167
AATTTTCGAGTTTTATGTAGGATTTCATCT555143GGTTTTAGGCTGTCTTAAGGTCACATTTGTTTGTAAGGAATGCATTGATAAGGTT
Gossypium raimondii isolate D5-4 chromosome D5_10.
CP032562.1:697961-697985
AATTTTCAAGTTTTATGTAGAATTTCATCG697961GGTTTTAGGCTGTCTTAAGGTCACATTTGTATGTAAGGAATGCATTGATAAGGTT
Gossypium turneri isolate D10-2 chromosome D10_10.
CP032580.1:731271-731295
AATTTTCAAGTTTTATGTAGGATTTCATCG731271GGTTTTAGGCTGTCTTAAGGTCACATTTGTATGTAAGGAATGCATTGATAAGGTT
Gossypium herbaceum isolate GPA1alz chromosome 10.
CP106701.1:845982-846006
AATTTTCGAGTTTTATGTAGGATTTCATTG845982GGTTTTAGGCTGTCTTAAGGTCACATTTGTATGTAAGGAATGCATTGATAAGGTT

Data Export:

Maximum 100000 results can be retrieved in various formats shown below:

Debug Info:

Redirect URI : https://gggenome.dbcls.jp/en/ddbj/TGTGACCTTAAGACAGCCTAAAACC
lang : en | db : ddbj | k : 0 | strand : | nogap : | query_string : TGTGACCTTAAGACAGCCTAAAACC | format : html | download : | debug : 

0.009 | 0.009 | search_start;
0.118 | 0.109 | search_plus_done; http://172.18.8.135:50400/match?q=TGTGACCTTAAGACAGCCTAAAACC&k=0&no_gap=0&offset=0&limit=50
0.150 | 0.033 | search_minus_done; http://172.18.8.135:50400/match?q=GGTTTTAGGCTGTCTTAAGGTCACA&k=0&no_gap=0&offset=0&limit=46
0.153 | 0.003 | cgi_end;

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