GGGenome Help | Japanese

Database:
 

Max number of mismatches/gaps mismatches : (no more than 25% of the query length)
Search for: both strand plus strand minus strand

2025-04-05 09:43:14, GGGenome : DDBJ release 134.0 (Mar, 2024)

Summary:

Results:

Matches are highlighted with blue background. Mismatches and indels are marked in red.

Sequence 1035 from Patent EP2519097.
JB348623.1:276-295
CTGTTGAAGCCTTAAAAGATCAAGTTGGTT276TGTGCAGATGGAATTACCCATTAAGGTGTGTGGCACAACACACAAAGAAT
Sequence 1037 from Patent EP2519097.
JB348625.1:122-141
CAGTTGAAGCCTTAAAAGATCAAGTTGGTT122TGTGCAGATGGAATTACCCATTAAGGTGTGTGGCACAACACACAAAGAAT
Sequence 1035 from patent US 9493785.
KH360535.1:276-295
CTGTTGAAGCCTTAAAAGATCAAGTTGGTT276TGTGCAGATGGAATTACCCATTAAGGTGTGTGGCACAACACACAAAGAAT
Sequence 1037 from patent US 9493785.
KH360537.1:122-141
CAGTTGAAGCCTTAAAAGATCAAGTTGGTT122TGTGCAGATGGAATTACCCATTAAGGTGTGTGGCACAACACACAAAGAAT
Sequence 1035 from Patent EP3056569.
LQ604184.1:276-295
CTGTTGAAGCCTTAAAAGATCAAGTTGGTT276TGTGCAGATGGAATTACCCATTAAGGTGTGTGGCACAACACACAAAGAAT
Sequence 1037 from Patent EP3056569.
LQ604186.1:122-141
CAGTTGAAGCCTTAAAAGATCAAGTTGGTT122TGTGCAGATGGAATTACCCATTAAGGTGTGTGGCACAACACACAAAGAAT
Sequence 1035 from patent US 10351873.
MO205757.1:276-295
CTGTTGAAGCCTTAAAAGATCAAGTTGGTT276TGTGCAGATGGAATTACCCATTAAGGTGTGTGGCACAACACACAAAGAAT
Sequence 1037 from patent US 10351873.
MO205759.1:122-141
CAGTTGAAGCCTTAAAAGATCAAGTTGGTT122TGTGCAGATGGAATTACCCATTAAGGTGTGTGGCACAACACACAAAGAAT
KS12042C07 KS12 Capsicum annuum cDNA, mRNA sequence.
CA524720.1:122-141
CAGTTGAAGCCTTAAAAGATCAAGTTGGTT122TGTGCAGATGGAATTACCCATTAAGGTGTGTGGCACAACACACAAAGAAT
KS26038H03 KS26 Capsicum annuum cDNA, mRNA sequence.
GD133198.1:148-167
CTGTTGAAGCCTTAAAAGATCAAGTTGGTT148TGTGCAGATGGAATTACCCATTAAGGTGTGTGGCACAACACACAAAGAAT
TSA: Capsicum annuum MGMT_Contig39986 mRNA sequence.
JW090230.1:328-347
CTGTTGAAGCCTTAAAAGATCAAGTTGGTT328TGTGCAGATGGAATTACCCATTGAGGTCTTTGGCACAACACACAAAGAAT
TSA: Capsicum annuum CM334_CLC_10698, mRNA sequence.
JW113352.1:170-189
CTGTTGAAGCCTTAAAAGATCAAGTTGGTT170TGTGCAGATGGAATTACCCATTAAGGTGTGTGGCACAACACACAAAGAAT
Capsicum annuum Takanotsume DNA, chromosome 7, sequence.
AP026702.1:234473597-234473616
CAGTTGAAGCCTTAAAAGATCAAGTTGGTT234473597TGTGCAGATGGAATTACCCATTAAGGTGTGTGGCACAACACACAAAGAAT
Capsicum annuum Takanotsume DNA, chromosome 7, sequence.
AP026702.1:234488780-234488799
CTGTTGAAGCCTTAAAAGATCAAGTTGGTT234488780TGTGCAGATGGAATTACCCATTAAGGTGTGTGGCACAACACACAAAGAAT
Capsicum annuum Takanotsume DNA, chromosome 7, sequence.
AP026702.1:234498794-234498813
CTGTTGAAGCCTTAAAAGATCAAGTTGGTT234498794TGTGCAGATGGAATTACCCATTGAGGTCTTTGGCACAACACACAAAGAAT
Capsicum annuum cultivar G1-36576 isolate CaT2T chromosome 7.
CP124725.1:237510582-237510601
CAGTTGAAGCCTTAAAAGATCAAGTTGGTT237510582TGTGCAGATGGAATTACCCATTAAGGTGTGTGGCACAACACACAAAGAAT
Capsicum annuum cultivar G1-36576 isolate CaT2T chromosome 7.
CP124725.1:237525754-237525773
CTGTTGAAGCCTTAAAAGATCAAGTTGGTT237525754TGTGCAGATGGAATTACCCATTAAGGTGTGTGGCACAACACACAAAGAAT
Capsicum annuum cultivar G1-36576 isolate CaT2T chromosome 7.
CP124725.1:237535716-237535735
CTGTTGAAGCCTTAAAAGATCAAGTTGGTT237535716TGTGCAGATGGAATTACCCATTGAGGTCTTTGGCACAACACACAAAGAAT
L.esculentum pT52 mRNA for wound-induced gene, partial cds.
X59882.1:58-77
CAGTAGAGGCCTTAAAAGATCAAGTTGGAT58TGTGCAGATGGAATTACCCATTGAGGTCTTTGGCACAACACACAAAGAAT
KS23011E08 KS23 Capsicum annuum cDNA, mRNA sequence.
GD112009.1:350-369
ATTCTTTGTGTGTTGTGCCACACACCTTAA350TGGGTAATTCCATCTGCACAAACCAACTTGATCTTTTAAGGCTTCAACAG
TSA: Capsicum annuum EJ_MegaContig_25639, mRNA sequence.
JW134213.1:340-359
ATTCTTTGTGTGTTGTGCCACACACCTTAA340TGGGTAATTCCATCTGCACAAACCAACTTGATCTTTTA

Data Export:

Maximum 100000 results can be retrieved in various formats shown below:

Debug Info:

Redirect URI : https://gggenome.dbcls.jp/en/ddbj/TGTGCAGATGGAATTACCCA
lang : en | db : ddbj | k : 0 | strand : | nogap : | query_string : TGTGCAGATGGAATTACCCA | format : html | download : | debug : 

0.009 | 0.009 | search_start;
0.554 | 0.545 | search_plus_done; http://172.18.8.135:50400/match?q=TGTGCAGATGGAATTACCCA&k=0&no_gap=0&offset=0&limit=50
0.695 | 0.140 | search_minus_done; http://172.18.8.135:50400/match?q=TGGGTAATTCCATCTGCACA&k=0&no_gap=0&offset=0&limit=31
0.696 | 0.001 | cgi_end;

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