GGGenome Help | Japanese

Database:
 

Max number of mismatches/gaps mismatches : (no more than 25% of the query length)
Search for: both strand plus strand minus strand

2025-04-04 19:37:41, GGGenome : DDBJ release 134.0 (Mar, 2024)

Summary:

Results:

Matches are highlighted with blue background. Mismatches and indels are marked in red.

Trifolium fragiferum genome assembly, chromosome: 3.
OX940791.1:54744921-54744940
GGATAACCAGCAGGTGGATAACCCCCTTGA54744921TGTGGAGGGTAGCCATGTGGAGGGTAACCTGCAGGAGGGTAGCCAGCAGG
Plasmodium vivax genome assembly, chromosome: 6.
LT615244.1:288587-288606
CCTCTCATCAGCAGGTCGTTTTGGTGACCA288587TGTGGAGGGTAGCCATGTGGAGGACAACCACGTGAAAGCTGCTCACCCCA
Plasmodium vivax genome assembly, chromosome: 6.
LT615261.1:261065-261084
CCTCTCATCAGCAGGTCGTTTTGGTGACCA261065TGTGGAGGGTAGCCATGTGGAGGACAACCACGTGAAAGCTGCTCACCCCA
Plasmodium vivax genome assembly, chromosome: 6.
LT635617.2:231716-231735
CCTCTCATCAGCAGGTCGTTTTGGTGACCA231716TGTGGAGGGTAGCCATGTGGAGGGTAGCCATGTGGAGGACAACCACGTGA
Plasmodium vivax genome assembly, chromosome: 6.
LT635617.2:231731-231750
TCGTTTTGGTGACCATGTGGAGGGTAGCCA231731TGTGGAGGGTAGCCATGTGGAGGACAACCACGTGAAAGCTGCTCACCCCA
Plasmodium vivax genome assembly, chromosome: 6.
LT841155.1:283206-283225
CCTCTCATCAGCAGGTCGTTTTGGTGACCA283206TGTGGAGGGTAGCCATGTGGAGGACAACCACGTGAAAGCTGCTCACCCCA
Trifolium repens mRNA, clone: WCC32i24_085, unspecified EST.
FY465415.1:286-305
TACCCTCCACCACCAGGGGCATACCCTCCA286CCACATGGCTACCCTCCACATCAAGGGGGTTATCCTCCAGCTGGTTACCC
Trifolium repens mRNA, clone: WCC41k20_029, unspecified EST.
FY468697.1:305-324
TACCCTCCACCACCAGGGGCATACCCTCCA305CCACATGGCTACCCTCCACATCAAGGGGGTTATCCTCCAGCTGGTTACCC
Trifolium repens mRNA, clone: WCC43e18_083, unspecified EST.
FY469277.1:267-286
TACCCTCCACCACCAGGGGCATACCCTCCA267CCACATGGCTACCCTCCACATCAAGGGGGTTATCCTCCAGCTGGTTACCC
Trifolium repens isolate ACLI19 chromosome 05_0cc.
CP125844.1:12907281-12907300
TACCCTCCACCACCAGGGGCATACCCTCCA12907281CCACATGGCTACCCTCCACATCAAGGGGGTTATCCTCCAGCTGGTTACCC
Trifolium repens isolate ACLI19 chromosome 05_Pall.
CP125845.1:12561371-12561390
TACCCTCCACCACCAGGGGCATACCCTCCA12561371CCACATGGCTACCCTCCACATCAAGGGGGTTATCCTCCAGCTGGTTACCC

Data Export:

Maximum 100000 results can be retrieved in various formats shown below:

Debug Info:

Redirect URI : https://gggenome.dbcls.jp/en/ddbj/TGTGGAGGGTAGCCATGTGG
lang : en | db : ddbj | k : 0 | strand : | nogap : | query_string : TGTGGAGGGTAGCCATGTGG | format : html | download : | debug : 

0.009 | 0.009 | search_start;
0.122 | 0.113 | search_plus_done; http://172.18.8.135:50400/match?q=TGTGGAGGGTAGCCATGTGG&k=0&no_gap=0&offset=0&limit=50
0.385 | 0.263 | search_minus_done; http://172.18.8.135:50400/match?q=CCACATGGCTACCCTCCACA&k=0&no_gap=0&offset=0&limit=44
0.388 | 0.003 | cgi_end;

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