GGGenome Help | English

データベース：
 

ミスマッチ/ギャップを許容 ミスマッチのみ許容 ： 塩基まで (検索する配列長の25%まで)
双方向を検索 ＋方向のみ検索 －方向のみ検索

2025-04-03 12:13:35, GGGenome : DDBJ release 134.0 (Mar, 2024)

Summary:

Results:

検索語に色がつきます（ミスマッチ・挿入欠失）。

Thermodesulfobacteriota bacterium isolate 4efedf9e-3e77-46ca-ab62-2aefeacd466c genome assembly, chromosome: 1.
OY763916.1:1944033-1944052
TGGGGCCTCGACGTGCGCGTCGGGAAGCCA1944033TGTGTGGAAAGGAAACATCGGAACCTTGATTGCGAAGGCCAGGAAAAACG
Arachis hypogaea cultivar Shitouqi chromosome B04.
CP030996.1:5152744-5152763
ACCTGTCCCCACACACATCAGCAGAATGGC5152744TGTGTGGAAAGGAAACATCGACACCTGACCAAAACCTCCCTCACCCTACT
Arachis ipaensis cultivar K30076 chromosome 04.
CP049895.1:5232373-5232392
ACCTGTCCCCACACACATCAGCAGAATGGC5232373TGTGTGGAAAGGAAACATCGACACCTGACCAAAACCTCCCTCACCCTACT
Malus hybrid cultivar cultivar Flame chromosome 1.
CP141910.1:39232433-39232452
AGTTGTCCACACACACCAGAACAAAATGGT39232433TGTGTGGAAAGGAAACATCGTCATCTAGTTGAGACAGCTAGAACTTTATT
Malus hybrid cultivar cultivar Flame chromosome 1.
CP141927.1:28832466-28832485
AGTTGTCCACACACACCAGAACAAAATGGT28832466TGTGTGGAAAGGAAACATCGTCATCTAGTTGAGACAGCTAGAACTTTATT
Malus hybrid cultivar cultivar Royalty chromosome 1.
CP141953.1:26933025-26933044
AGTTGTCCACACACACCAGAACAAAATGGT26933025TGTGTGGAAAGGAAACATCGTCATCTAGTTGAGACAGCTAGAACTTTATT
Malus hybrid cultivar cultivar Royalty chromosome 5.
CP141957.1:18145837-18145856
AGTTGTCCACACATACCAGAACAAAATGTT18145837TGTGTGGAAAGGAAACATCGCCATCTAGTTGAGATAGGTAAAACCTTATT
Malus domestica genotype Florina amplicon M8s genomic sequence.
KM105074.1:1-20
1TGTGTGGAAAGGAAACATCGTCATCTAGTTGAGACAGCTAGAACTTTATT
Malus domestica genotype McIntosh amplicon M8s genomic sequence.
KM105075.1:1-20
1TGTGTGGAAAGGAAACATCGTCATCTAGTTGAGACAGCTAGAACTTTATT
Malus domestica genotype Braeburn amplicon M8s genomic sequence.
KM105076.1:1-20
1TGTGTGGAAAGGAAACATCGTCATCTAGTTGAGACAGCTAGAACTTTATT
Malus domestica genotype Jonathan amplicon M8s genomic sequence.
KM105077.1:1-20
1TGTGTGGAAAGGAAACATCGTCATCTAGTTGAGACAGCTAGAACTTTATT
Malus domestica genotype F2-26829-2-2 amplicon M8s genomic sequence.
KM105078.1:1-20
1TGTGTGGAAAGGAAACATCGTCATCTAGTTGAGACAGCTAGAACTTTATT
Malus domestica genotype Granny Smith amplicon M8s genomic sequence.
KM105079.1:1-20
1TGTGTGGAAAGGAAACATCGTCATCTAGTTGAGACAGCTAGAACTTTATT
Malus domestica genotype Delicious amplicon M8s genomic sequence.
KM105080.1:1-20
1TGTGTGGAAAGGAAACATCGTCATCTAGTTGAGACAGCTAGAACTTTATT
Malus domestica genotype Cox's Orange Pippin amplicon M8s genomic sequence.
KM105081.1:1-20
1TGTGTGGAAAGGAAACATCGTCATCTAGTTGAGACAGCTAGAACTTTATT
Malus domestica genotype Golden Delicious amplicon M8s genomic sequence.
KM105082.1:1-20
1TGTGTGGAAAGGAAACATCGTCATCTAGTTGAGACAGCTAGAACTTTATT
Malus sylvestris genome assembly, chromosome: 1.
OU696503.1:25050943-25050962
AGTTGTCCACACACACCAGAACAAAATGGT25050943TGTGTGGAAAGGAAACATCGTCATCTAGTTGAGACAGCTAGAACTTTATT
Malus domestica genome assembly, chromosome: 1.
OU696677.1:25104690-25104709
AGTTGTCCACACACACCAGAACAAAATGGT25104690TGTGTGGAAAGGAAACATCGTCATCTAGTTGAGACAGCTAGAACTTTATT
Vicia faba genome assembly, chromosome: 2.
OX451737.1:1041281204-1041281223
TAAATGATATTTTTTGTGTTTTAGTGACAA1041281204TGTGTGGAAAGGAAACATCGCCATTTAAAGGAAAGTAAAAGAAAGAAAGG
Vicia faba genome assembly, chromosome: 2.
OX451737.1:1102455249-1102455268
TAAATGATATTCTTGGTGTTTTAGTGAAAG1102455249TGTGTGGAAAGGAAACATCGCCATTTAAATGAAAGTAAAAGAAAGAAAGG
Alnus glutinosa genome assembly, chromosome: 11.
OY340908.1:8010590-8010609
TCTTGCCCTCACACTCATCAACAACAAGGG8010590TGTGTGGAAAGGAAACATCGACACCTCATCGATACAACCTTGGCTATCCT
Crataegus laevigata genome assembly, chromosome: 4.
OY756941.1:36825319-36825338
AGTTGTCCACACACTCCCGAGCAAAATGGT36825319TGTGTGGAAAGGAAACATCGTCATTTAGTTGAGACGGCTCGCACTTTATT
Crataegus laevigata genome assembly, chromosome: 5.
OY756942.1:37318401-37318420
AATTGTCCACACACACCAGAATAGAATGGT37318401TGTGTGGAAAGGAAACATCGGCATCTTGTTGAAACTGCTCAGACTTTGTT
Crataegus laevigata genome assembly, chromosome: 13.
OY756950.1:4937640-4937659
AGTTGTCCACACACTCCCGAGCAAAATGGT4937640TGTGTGGAAAGGAAACATCGTCATTTAGTTGAGACGGCTCGCACTTTATT
Caradrina clavipalpis genome assembly, chromosome: 23.
OW052110.1:8123893-8123912
GGCGCATATGCTCCCGAGATCCAAGGCGTA8123893TGTGTGGAAAGGAAACATCGAGGTAAATTTTCGTCAGTAAGGGTCAGACA
Camelina sativa cultivar CO46 chromosome 7.
CP131556.1:27588915-27588934
CGCAATGCTCTAGCGACGTTGAGAATGTGG27588915CGATGTTTCCTTTCCACACAACCATTCTATTGGGAGTGCCAACACATGAG
Malus hybrid cultivar cultivar SH6 chromosome 9.
CP143383.1:10241576-10241595
AATCAAGTTCTAGATGTCTCAACTAGATGA10241576CGATGTTTCCTTTCCACACAACCATTTTGTTCTGGTGTGTGTGGACAACT
Malus domestica genome assembly, chromosome: 5.
OU696681.1:25379979-25379998
AATAAGGTTCTAGCTGTCTCAACCAAATGA25379979CGATGTTTCCTTTCCACACAACCATTTTGTTCTTGTGTGTGTGGACATCT
Malus domestica genome assembly, chromosome: 5.
OU744995.1:27248014-27248033
AATAAGGTTCTAGCTGTCTCAACCAAATGA27248014CGATGTTTCCTTTCCACACAACCATTTTGTTCTTGTGTGTGTGGACATCT
Vicia faba genome assembly, chromosome: 4.
OX451739.1:1170955505-1170955524
CCTTTCATTCTTTTACTTTTCTTTAAATGG1170955505CGATGTTTCCTTTCCACACACTGTCACTAAAACACCAAAAATTTCATTTA
Alnus glutinosa genome assembly, chromosome: 2.
OY340899.1:19736479-19736498
AGGAGAGCCAAGGTTGTATCGATGAGTTGT19736479CGATGTTTCCTTTCCACACACCCTTGTTGTTGATGAGTGTGAGGCCAAGA
Alnus glutinosa genome assembly, chromosome: 3.
OY340900.1:25035161-25035180
AGGAGAGCCAAGGTTGTATCGATGAGGTGT25035161CGATGTTTCCTTTCCACACACCCTTCTTGTTGATGAGTGTGAGGGCAAGA
Alnus glutinosa genome assembly, chromosome: 6.
OY340903.1:2777188-2777207
AGGAGAGCCAAGGTTGTATCGATGAGGTGT2777188CGATGTTTCCTTTCCACACACCCTTGTTGTTGATGAGTGTGAGGGCAAGA
Alnus glutinosa genome assembly, chromosome: 7.
OY340904.1:13981896-13981915
AGGAGAGCCAAGGTAGTATCAATGAGGTGT13981896CGATGTTTCCTTTCCACACACCCCTGTTGTTGATGAGTGTGAGGGCAGGA
Malus x robusta genome assembly, chromosome: 12.
OY720336.1:5127215-5127234
AATAAAGTTCTAGCTGTCTCAACTAGATGA5127215CGATGTTTCCTTTCCACACAACCATTTTGTTCTGGTGTGTGTGGACAACT
Crataegus laevigata genome assembly, chromosome: 14.
OY756951.1:5083459-5083478
AATAAAATCTTAGCTGTCTTAACTAGATGA5083459CGATGTTTCCTTTCCACACAATCGTTTTGTTCTTATGTGTGTGGACAACT

Data Export:

下記のフォーマットで最大100000件まで検索結果を取得できます。

Debug Info:

Redirect URI : https://gggenome.dbcls.jp/ja/ddbj/TGTGTGGAAAGGAAACATCG
lang : ja | db : ddbj | k : 0 | strand : | nogap : | query_string : TGTGTGGAAAGGAAACATCG | format : html | download : | debug : 

0.009 | 0.009 | search_start;
0.391 | 0.382 | search_plus_done; http://172.18.8.135:50400/match?q=TGTGTGGAAAGGAAACATCG&k=0&no_gap=0&offset=0&limit=50
0.499 | 0.108 | search_minus_done; http://172.18.8.135:50400/match?q=CGATGTTTCCTTTCCACACA&k=0&no_gap=0&offset=0&limit=25
0.507 | 0.007 | cgi_end;

GGGenome by @meso_cacase at DBCLS
This page is licensed under a Creative Commons Attribution 4.0 International License (CC BY 4.0).