GGGenome Help | Japanese

Database:
 

Max number of mismatches/gaps mismatches : (no more than 25% of the query length)
Search for: both strand plus strand minus strand

2025-04-05 19:33:56, GGGenome : DDBJ release 134.0 (Mar, 2024)

Summary:

Results:

Matches are highlighted with blue background. Mismatches and indels are marked in red.

Apodemus sylvaticus genome assembly, chromosome: 2.
OX359298.1:28846113-28846135
CACACACCTTGCATTTATCTGCTTTGTTGT28846113TGTTAAAGACCAGAAAGCCCTTGAGTGGCAGGGTGGGCAGTCTTGTGCTCACA
SSR_PbR21 Pyrus pyrifolia leaf SSR Pyrus pyrifolia genomic clone PbR21 5', genomic survey sequence.
GS928041.1:57-79
TTAGGTGTGCTGGTATAGAAAATTTTAGAG57TGTTAAAGACCAGAAAGCCCTTGCTTATACACCCCTTATGCTCTCTCTCTCTC
SSR_PbR22 Pyrus pyrifolia leaf SSR Pyrus pyrifolia genomic clone PbR22 5', genomic survey sequence.
GS928042.1:57-79
TTAGGTGTGCTGGTATAGAAAATTTTAGAG57TGTTAAAGACCAGAAAGCCCTTGCTTATAAACCCCTTATGCTCTCTCTCTCTC
Pyrus pyrifolia cultivar Housui mRNA, clone: TsuENH006_00610m, 5' end sequence.
AB450694.1:119-141
GAGAGAGAGAGAGCATAAGGGGTTTATAAG119CAAGGGCTTTCTGGTCTTTAACACTCTAAAATTTTCTATACCAGCACACCTAA
Pyrus pyrifolia mRNA, clone: NLE2_06_10, 5' end sequence, expressed in leaf.
HX767174.1:18-40
CATAAGGGGTTTATAAG18CAAGGGCTTTCTGGTCTTTAACACTCTAAAATTTTCTATACCAGCACACCTAA

Data Export:

Maximum 100000 results can be retrieved in various formats shown below:

Debug Info:

Redirect URI : https://gggenome.dbcls.jp/en/ddbj/TGTTAAAGACCAGAAAGCCCTTG
lang : en | db : ddbj | k : 0 | strand : | nogap : | query_string : TGTTAAAGACCAGAAAGCCCTTG | format : html | download : | debug : 

0.009 | 0.009 | search_start;
0.203 | 0.194 | search_plus_done; http://172.18.8.135:50400/match?q=TGTTAAAGACCAGAAAGCCCTTG&k=0&no_gap=0&offset=0&limit=50
0.322 | 0.119 | search_minus_done; http://172.18.8.135:50400/match?q=CAAGGGCTTTCTGGTCTTTAACA&k=0&no_gap=0&offset=0&limit=47
0.324 | 0.001 | cgi_end;

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