GGGenome Help | English

データベース:

ミスマッチ/ギャップを許容 ミスマッチのみ許容 : 塩基まで (検索する配列長の25%まで)
双方向を検索 +方向のみ検索 -方向のみ検索

2025-04-16 01:00:36, GGGenome : DDBJ release 134.0 (Mar, 2024)

Summary:

Results:

検索語に色がつきます(ミスマッチ挿入欠失

VMC8D11 VMC library Vitis vinifera STS genomic, sequence tagged site.
BV722709.1:3-24
AC3TGTTGAAGCTAGCATTGTCTCCTCAACAAAGAGAGAGAGAGAGAGAGAGAGT
Vitis vinifera cultivar Pinot Noir 40024 chromosome 7.
CP126654.1:23096438-23096459
ACCATGCATCTTGGATTGAAGAAAGAGTAC23096438TGTTGAAGCTAGCATTGTCTCCTCAACAAAGAGAGAGAGAGAGAGAGATGGA
Vitis x doaniana cultivar PI 588149 chromosome 7.
CP128333.1:23637771-23637792
ACCATGCATCTTGGATTGAAGAAAGAGTAC23637771TGTTGAAGCTAGCATTGTCTCCTCAACAAAGAGAGAGAGAGAGAGAGAGATG
Vitis x doaniana cultivar PI 588149 chromosome 7.
CP128352.1:24296670-24296691
ACCATGCATCTTGGATTGAAGAAAGAGTAC24296670TGTTGAAGCTAGCATTGTCTCCTCAACAAAGAGAGAGAGAGATGGAAGTTAG
Vitis vinifera, whole genome shotgun sequence, contig VV78X098781.4, clone ENTAV 115.
AM470837.1:32154-32175
TCTCTCTCTCTCTCTCTCTCTCTTTGTTGA32154GGAGACAATGCTAGCTTCAACAGTACTCTTTCTTCAATCCAAGATGCATGGT
Vitis vinifera cv. PN40024, annotated scaffold_500.assembly12x.
FN596294.1:482-503
TCTCTCTCTCTCTCTCTCTCTCTTTGTTGA482GGAGACAATGCTAGCTTCAACAGTACTCTTTCTTCAATCCAAGATGCATGGT
Vitis vinifera cv. PN40024, annotated scaffold_304.assembly12x.
FN596780.1:110721-110742
TCCATCTCTCTCTCTCTCTCTCTTTGTTGA110721GGAGACAATGCTAGCTTCAACAGTACTCTTTCTTC

Data Export:

下記のフォーマットで最大100000件まで検索結果を取得できます。

Debug Info:

Redirect URI : https://gggenome.dbcls.jp/ja/ddbj/TGTTGAAGCTAGCATTGTCTCC
lang : ja | db : ddbj | k : 0 | strand : | nogap : | query_string : TGTTGAAGCTAGCATTGTCTCC | format : html | download : | debug :

0.009 | 0.009 | search_start;
0.372 | 0.364 | search_plus_done; http://172.18.8.135:50400/match?q=TGTTGAAGCTAGCATTGTCTCC&k=0&no_gap=0&offset=0&limit=50
0.481 | 0.108 | search_minus_done; http://172.18.8.135:50400/match?q=GGAGACAATGCTAGCTTCAACA&k=0&no_gap=0&offset=0&limit=46
0.483 | 0.002 | cgi_end;

GGGenome by @meso_cacase at DBCLS
This page is licensed under a Creative Commons Attribution 4.0 International License (CC BY 4.0).