GGGenome | Results

2025-04-06 22:19:00, GGGenome : DDBJ release 134.0 (Mar, 2024)

Summary:

Results:

Matches are highlighted with blue background. Mismatches and in~~dels~~ are marked in red.

BR031580 floral buds cDNA library KBFS Brassica rapa subsp. pekinensis cDNA clone KBFS-011C11 5', mRNA sequence.
EX046936.1:225-244

TTTTTTTGGTTTTTTTTTTCTTATAAATAT225TGTTGAAGTCCTGATCATTGTTTATTTTTCGCCGTTTTAAACTATTTTTC

BR035893 floral buds cDNA library KBFS Brassica rapa subsp. pekinensis cDNA clone KBFS-070G01 5', mRNA sequence.
EX051249.1:225-244

TTTTTTTGGTTTTTTTTTTCTTATAAATAT225TGTTGAAGTCCTGATCATTGTTTATTTTTCGCCGTTTTAAACTATTTTTC

BR039236 floral buds cDNA library KBFS Brassica rapa subsp. pekinensis cDNA clone KBFS-138F07 5', mRNA sequence.
EX054592.1:223-242

TTTTTTTGGTTTTTTTTTTCTTATAAATAT223TGTTGAAGTCCTGATCATTGTTTATTTTTCGCCGTTTTAAACTATTTTTC

BR052101 pollen cDNA library KBPL Brassica rapa subsp. pekinensis cDNA clone KBPL-44F08 5', mRNA sequence.
EX067457.1:228-247

TTTTTTTGGTTTTTTTTTTCTTATAAATAT228TGTTGAAGTCCTGATCATTGTTTATTTTTCGCCGTTTTAAACTATTTTTC

BR057895 root cDNA library KBRT Brassica rapa subsp. pekinensis cDNA clone KBRT-013C09 5', mRNA sequence.
EX073251.1:341-360

TTTTTTTGGTTTTTTTTTTCTTATAAATAT341TGTTGAAGTCCTGATCATTGTTTATTTTTCGCCGTTTTAAACTATTTTTC

TSA: Brassica rapa subsp. pekinensis RNA, contig: CF3_833.
FX701820.1:1293-1312

TTTTTTTGGTTTTTTTTTTCTTATAAATAT1293TGTTGAAGTCCTGATCATTGTTTATTTTTCGCCGTTTTAAACTATTTTTC

TSA: Brassica rapa x Raphanus sativus RNA, contig: BB3_7823.
FX734309.1:1492-1511

TTTTTTTGGTTTTTTTTTTCTTATAAATAT1492TGTTGAAGTCCTGATCATTGTTTATTTTTCGCCGTTTTAAACTATTTTTC

Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrB009G06, *** SEQUENCING IN PROGRESS ***, 7 ordered pieces.
AC240986.1:40415-40434

TTTTTTTGGTTTTTTTTTTCTTATAAATAT40415TGTTGAAGTCCTGATCATTGTTTATTTTTCGCCGTTTTAAACTATTTTTC

Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrB070G10, *** SEQUENCING IN PROGRESS ***, 6 ordered pieces.
AC241060.1:62285-62304

TTTTTTTGGTTTTTTTTTTCTTATAAATAT62285TGTTGAAGTCCTGATCATTGTTTATTTTTCGCCGTTTTAAACTATTTTTC

Brassica napus genome assembly, chromosome: A03.
HG994357.1:1741464-1741483

TTTTTTTGGTTTTTTTTTTCTTATAAATAT1741464TGTTGAAGTCCTGATCATTGTTTATTTTTCGCCGTTTTAAACTATTTTTC

BR112349 ovule and silique cDNA library KHOS Brassica rapa subsp. pekinensis cDNA clone KHOS-07H04 3', mRNA sequence.
EX128519.1:34-53

GAAAAATAGTTTAAAACGGCGAAAAATAAA34CAATGATCAGGACTTCAACAATATTTATAAGAAAAAAAAAACCAAAAAAA

BR112393 ovule and silique cDNA library KHOS Brassica rapa subsp. pekinensis cDNA clone KHOS-08E04 3', mRNA sequence.
EX128563.1:34-53

GAAAAATAGTTTAAAACGGCGAAAAATAAA34CAATGATCAGGACTTCAACAATATTTATAAGAAAAAAAAAACCAAAAAAA

Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrH052O08, complete sequence.
AC155342.2:129433-129452

GAAAAATAGTTTAAAACGGCGAAAAATAAA129433CAATGATCAGGACTTCAACAATATTTATAAGAAAAAAAAAACCAAAAAAA

Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrB022F09, complete sequence.
AC240998.1:9172-9191

GAAAAATAGTTTAAAACGGCGAAAAATAAA9172CAATGATCAGGACTTCAACAATATTTATAAGAAAAAAAAAACCAAAAAAA

Ajuga chamaepitys genome assembly, chromosome: 13.
OY282507.1:48150174-48150193

GGAGGCGTTGCTGCAGTGTGAAAATACTAA48150174CAATGATCAGGACTTCAACAAGCATCTAGGCATATGGAAGGTTCTTAGTG

Data Export:

Maximum 100000 results can be retrieved in various formats shown below:

Tab-delimited text: Open in new window | Download
You can copy-paste the result into spreadsheet softwares (e.g. Excel) or text editors.
CSV format: Open in new window | Download
You can open CSV files using spreadsheet softwares (e.g. Excel) or text editors.
BED format: Link | Download
GFF format: Link | Download
JSON format: Link | Download

Debug Info:

0.008 | 0.008 | search_start;
0.381 | 0.372 | search_plus_done; http://172.18.8.135:50400/match?q=TGTTGAAGTCCTGATCATTG&k=0&no_gap=0&offset=0&limit=50
0.552 | 0.172 | search_minus_done; http://172.18.8.135:50400/match?q=CAATGATCAGGACTTCAACA&k=0&no_gap=0&offset=0&limit=40
0.556 | 0.004 | cgi_end;

GGGenome by @meso_cacase at DBCLS
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