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ミスマッチ/ギャップを許容 ミスマッチのみ許容 ： 塩基まで (検索する配列長の25%まで)
双方向を検索 ＋方向のみ検索 －方向のみ検索

2025-04-03 12:53:45, GGGenome : DDBJ release 134.0 (Mar, 2024)

Summary:

Results:

検索語に色がつきます（ミスマッチ・挿入欠失）。

Orcinus orca genome assembly, chromosome: 2.
OW443361.1:173277911-173277930
TCAGTTTTACTGGAATTCTCCATAAGCTAC173277911TGTTGAATAAAGATGCCACCACCATACCCATACCCATACCCAGGTTTATA
Hyperoodon ampullatus genome assembly, chromosome: 3.
OX457058.1:151596237-151596256
TCAGTTTTACTGGAATTCTCCATAAGCCAC151596237TGTTGAATAAAGATGCCACCACCATACCCATACCCAGGTTTATAAATCAG
Balaenoptera acutorostrata genome assembly, chromosome: 3.
OX465352.1:152573073-152573092
TCAGTTTTACTGGAATTCTCCATAAGCTAT152573073TGTTGAATAAAGATGCCACCACCATACCCATACCCAGGTTTATAAATCAG
Globicephala melas genome assembly, chromosome: 2.
OY734040.1:122053413-122053432
TCAGTTTTACTGGAATTCTCCATAAGCTAC122053413TGTTGAATAAAGATGCCACCACCATACCCATACCCATACCCAGGTTTATA
Lipophrys pholis genome assembly, chromosome: 20.
OY726552.1:7649041-7649060
GTCAGCGCTGTCTGCTTGTGTTGGACTCAG7649041TGTTGAATAAAGATGCCACCCTCAGCCTTTACCTGGAGTGTTGAGCAGTC
Blennius ocellaris genome assembly, chromosome: 19.
OY730219.1:12273759-12273778
GTCAGCACTGTCTACTCGTGTTGGAGTCAG12273759TGTTGAATAAAGATGCCACCCTCAGCCTTTACCTGGAGTGTTGAGCAGTC
Trifolium pratense DNA, clone:RC0316f.ab1.
DE245168.1:291-310
TGTCTAAATTTTTTGTTCAAATATCTTTTC291TGTTGAATAAAGATGCCACCATAAATTTTTTCACTCTACACCTTAGTTGA
Avena longiglumis genome assembly, chromosome: 5A.
OU342751.1:514976229-514976248
AGGGAGTCAAGGGTGTAGACGATTATTCCA514976229TGTTGAATAAAGATGCCACCGGTAAGCTTGGCTTTACTTCCTATCAAAAA
Platycnemis pennipes genome assembly, chromosome: 4.
OW121850.1:50234519-50234538
CAAAAGCTTTGGAAGCTTACAGTAATTTTT50234519TGTTGAATAAAGATGCCACCATAGCAGCAATGCAACACCTGGAAACCACA
Heligmosomoides bakeri genome assembly, chromosome: V.
OX375868.1:12114007-12114026
ATATATGATTTGGAGTCTATTTGTGCAAAA12114007TGTTGAATAAAGATGCCACCATAACAATTTTTTGCCTTAAAGCATTTTTA
Lagenorhynchus albirostris genome assembly, chromosome: 1.
OX459072.1:28542642-28542661
TATAAACCTGGGTATGGGTATGGGTATGGT28542642GGTGGCATCTTTATTCAACAGTAGCTTATGGAGAATTCCAGTAAAACTGA
Stenella coeruleoalba genome assembly, chromosome: 2.
OX596386.1:28068110-28068129
TATAAACCTGGGTATGGGTATGGGTATGGT28068110GGTGGCATCTTTATTCAACAGTAGCTTATGGAGAATTCCAGTAAAACTGA
Phocoena phocoena genome assembly, chromosome: 2.
OZ004758.1:28199160-28199179
CTGATTTATAAACCTGGGTATGGGTATGGT28199160GGTGGCATCTTTATTCAACAGTAGCTTATGGAGAATTCCAGTAAAACTGA
UNVERIFIED_CONTAM: Avena longiglumis isolate 447 chromosome 3.
CP125975.1:69663258-69663277
TTTTTGATAGGAAGTAAAGCCAAGCTTACT69663258GGTGGCATCTTTATTCAACATGGAATAATCGTCTACACCCTTGACTCCCT

Data Export:

下記のフォーマットで最大100000件まで検索結果を取得できます。

Debug Info:

Redirect URI : https://gggenome.dbcls.jp/ja/ddbj/TGTTGAATAAAGATGCCACC
lang : ja | db : ddbj | k : 0 | strand : | nogap : | query_string : TGTTGAATAAAGATGCCACC | format : html | download : | debug : 

0.009 | 0.009 | search_start;
0.201 | 0.192 | search_plus_done; http://172.18.8.135:50400/match?q=TGTTGAATAAAGATGCCACC&k=0&no_gap=0&offset=0&limit=50
0.300 | 0.099 | search_minus_done; http://172.18.8.135:50400/match?q=GGTGGCATCTTTATTCAACA&k=0&no_gap=0&offset=0&limit=40
0.303 | 0.003 | cgi_end;

GGGenome by @meso_cacase at DBCLS
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