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Database:
 

Max number of mismatches/gaps mismatches : (no more than 25% of the query length)
Search for: both strand plus strand minus strand

2025-04-05 08:13:40, GGGenome : DDBJ release 134.0 (Mar, 2024)

Summary:

Results:

Matches are highlighted with blue background. Mismatches and indels are marked in red.

Sequence 3144 from patent US 10858665.
MX131496.1:323-342
AAGATATGCAGGATTATTTTTCTCACTTTG323TGTTGATATCACCGACAACGAGTTAGCTTATTTGGAGTCCATCCACTTGT
Sequence 3144 from patent US 11485982.
OO833881.1:323-342
AAGATATGCAGGATTATTTTTCTCACTTTG323TGTTGATATCACCGACAACGAGTTAGCTTATTTGGAGTCCATCCACTTGT
Sequence 3144 from patent US 11512323.
OO917583.1:323-342
AAGATATGCAGGATTATTTTTCTCACTTTG323TGTTGATATCACCGACAACGAGTTAGCTTATTTGGAGTCCATCCACTTGT
Solanum melongena mRNA, clone: AE506F04, 5'end, expressed in ovary at 5d post-anthesis.
FS007058.1:229-248
AAGATATGCAGGATTATTTTTCTCACTTTG229TGTTGATATCACCGACAACGAGTTAGCTTATTTGGAGTCCATCCACTTGT
Solanum melongena mRNA, clone: MLF05E12, 5'end, expressed in leaf at fully expanded leaf.
FS025430.1:231-250
AAGATATGCAGGATTATTTTTCTCACTTTG231TGTTGATATCACCGACAACGAGTTAGCTTATTTGGAGTCCATCCACTTGT
Solanum melongena mRNA, clone: SEP07D07, 5'end, expressed in sepal at 10d after anthesis.
FS062098.1:235-254
AAGATATGCAGGATTATTTTTCTCACTTTG235TGTTGATATCACCGACAACGAGTTAGCTTATTTGGAGTCCATCCACTTGT
Solanum melongena mRNA, clone: SmFL22D14, 5'end.
FS081143.1:234-253
AAGATATGCAGGATTATTTTTCTCACTTTG234TGTTGATATCACCGACAACGAGTTAGCTTATTTGGAGTCCATCCACTTGT
Solanum melongena mRNA, clone: SmFL33J04, 5'end.
FS089161.1:235-254
AAGATATGCAGGATTATTTTTCTCACTTTG235TGTTGATATCACCGACAACGAGTTAGCTTATTTGGAGTCCATCCACTTGT
Solanum torvum mRNA, clone: TVR21P16, 5'end, expressed in root at vegetative stage, 2 months after germination.
FS117204.1:235-254
AAGACATGCAGGATTATTTTTCTCACTTTG235TGTTGATATCACCGACAACGAGTTAGCTTATTTGGAGTCCATCCACTTGT
Camptogramma bilineatum genome assembly, chromosome: 12.
OY292462.1:12951789-12951808
GTCTATCTGTATTGTCTGGTTGTATGTCTA12951789TGTTGATATCACCGACAACGGTAATAGTTGAGCACTTTTTTACGGTATTT
Camptogramma bilineatum genome assembly, chromosome: 23.
OY292473.1:6861799-6861818
GTCTATCTGTATTGTCTGGTTGTATGTCTA6861799TGTTGATATCACCGACAACGGTAATAGTTGAGCACTTTTTTACGGTATTT
Lymantria dispar genome assembly, chromosome: 2.
OY755127.1:28513046-28513065
AGGTTTCTTGGCTGGTTCCTAAGAGATCAA28513046TGTTGATATCACCGACAACGATGACATTTTTAAATAGCGATAATTCTTTC
Lymantria dispar genome assembly, chromosome: 5.
OY755130.1:24275235-24275254
AGGTTTCTTGGCTGGTTCCTAAGAGATCAA24275235TGTTGATATCACCGACAACGATGACATTTTTAAATAGCGATAATTCTTTC
Lymantria dispar genome assembly, chromosome: 9.
OY755134.1:27761064-27761083
AGGTTTCTTGGCTGGTTCCTAAGAGATCAA27761064TGTTGATATCACCGACAACGATGACATTTTTAAATAGCGATAATTCTTTC
Lymantria dispar genome assembly, chromosome: 12.
OY755137.1:1947036-1947055
AGGTTTCTTGGCTGGTTCCTAAGAGATCAA1947036TGTTGATATCACCGACAACGATGACATTTTTAAATAGCGATAATTCTTTC
Solanum melongena mRNA, clone: AE506F04, 3'end, expressed in ovary at 5d post-anthesis.
FS007059.1:401-420
ACAAGTGGATGGACTCCAAATAAGCTAACT401CGTTGTCGGTGATATCAACACAAAGTGAGAAAAATAATCCTGCATATCTT
Solanum melongena mRNA, clone: CAL01L23, 3'end, expressed in callus at 3d after subculture.
FS008441.1:403-422
ACAAGTGGATGGACTCCAAATAAGCTAACT403CGTTGTCGGTGATATCAACACAAAGTGAGAAAAATAATCCTGCATATCTT
Solanum melongena mRNA, clone: MLF05E12, 3'end, expressed in leaf at fully expanded leaf.
FS025431.1:377-396
ACAAGTGGATGGACTCCAAATAAGCTAACT377CGTTGTCGGTGATATCAACACAAAGTGAGAAAAATAATCCTGCATATCTT
Solanum melongena mRNA, clone: SEP07D07, 3'end, expressed in sepal at 10d after anthesis.
FS062099.1:377-396
ACAAGTGGATGGACTCCAAATAAGCTAACT377CGTTGTCGGTGATATCAACACAAAGTGAGAAAAATAATCCTGCATATCTT
Solanum melongena mRNA, clone: SmFL22D14, 3'end.
FS081144.1:420-439
ACAAGTGGATGGACTCCAAATAAGCTAACT420CGTTGTCGGTGATATCAACACAAAGTGAGAAAAATAATCCTGCATATCTT
Solanum melongena mRNA, clone: SmFL33J04, 3'end.
FS089162.1:403-422
ACAAGTGGATGGACTCCAAATAAGCTAACT403CGTTGTCGGTGATATCAACACAAAGTGAGAAAAATAATCCTGCATATCTT
Solanum torvum mRNA, clone: TVR21P16, 3'end, expressed in root at vegetative stage, 2 months after germination.
FS117205.1:471-490
ACAAGTGGATGGACTCCAAATAAGCTAACT471CGTTGTCGGTGATATCAACACAAAGTGAGAAAAATAATCCTGCATGTCTT
Rhizobium sp. 007 plasmid unnamed2.
CP064189.1:252381-252400
ACTTCCCGCGAAGTAGCCCAACGAGCGCCA252381CGTTGTCGGTGATATCAACAATCTTCCCCGAAATTGCGGAATGCTTGTCG
Chrysolina oricalcia genome assembly, chromosome: 5.
OX101813.2:31381330-31381349
ATTTATCCACAGCTGGCATCGTGTCGGTGT31381330CGTTGTCGGTGATATCAACATAAACGTGTTTAGTATAGACTTTCAAATAA
Acronicta psi genome assembly, chromosome: 20.
OX276488.1:3153655-3153674
AAACTCTGTACGAATATATAAATCGATTAC3153655CGTTGTCGGTGATATCAACATTGATATAAAACCCTTTAATAATGACAAAA
Camptogramma bilineatum genome assembly, chromosome: 19.
OY292469.1:12899369-12899388
TAAATACCGTAAAAAGTGCTCAACTATAAC12899369CGTTGTCGGTGATATCAACATAGACATACAACCAGACAATACAGATAGAC
Lymantria dispar genome assembly, chromosome: 6.
OY755131.1:10656755-10656774
ACAGACAAACCTAGTATTCATTAATGTCAT10656755CGTTGTCGGTGATATCAACATTGATCTCTTAGGAACCAGCCAAGAAACCT
Lymantria dispar genome assembly, chromosome: 16.
OY755141.1:1334909-1334928
GAAAGAATTATCGCTATTTAAAAATGTCAT1334909CGTTGTCGGTGATATCAACATTGATCTCTTAGGAACCAGCCAAGAAACCT
Lymantria dispar genome assembly, chromosome: 19.
OY755144.1:2696262-2696281
GAAAGAATTATCGCTATTTAAAAATGTCAT2696262CGTTGTCGGTGATATCAACATTGATCTCTTAGGAACCAGCCAAGAAACCT
Lymantria dispar genome assembly, chromosome: 20.
OY755145.1:14132772-14132791
GAAAGAATTATCGCTATTTAAAAATGTCAT14132772CGTTGTCGGTGATATCAACATTGATCTCTTAGGAACCAGCCAAGAAACCT
Lymantria dispar genome assembly, chromosome: 25.
OY755150.1:3209265-3209284
GAAAGAATTATCGCTATTTAAAAATGTCAT3209265CGTTGTCGGTGATATCAACATTGATCTCTTAGGAACCAGCCAAGAAACCT

Data Export:

Maximum 100000 results can be retrieved in various formats shown below:

Debug Info:

Redirect URI : https://gggenome.dbcls.jp/en/ddbj/TGTTGATATCACCGACAACG
lang : en | db : ddbj | k : 0 | strand : | nogap : | query_string : TGTTGATATCACCGACAACG | format : html | download : | debug : 

0.009 | 0.009 | search_start;
0.682 | 0.673 | search_plus_done; http://172.18.8.135:50400/match?q=TGTTGATATCACCGACAACG&k=0&no_gap=0&offset=0&limit=50
1.172 | 0.490 | search_minus_done; http://172.18.8.135:50400/match?q=CGTTGTCGGTGATATCAACA&k=0&no_gap=0&offset=0&limit=35
1.182 | 0.011 | cgi_end;

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