GGGenome | Results

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2025-04-09 17:24:09, GGGenome : DDBJ release 134.0 (Mar, 2024)

Summary:

Results:

Matches are highlighted with blue background. Mismatches and in~~dels~~ are marked in red.

Acomys kempi genome assembly, chromosome: 13.
OU015367.1:70894656-70894675

GCCAGATCACCAGGGATCACATGGGCCACT70894656TGTTGCATCAGCTGGTACAGTCAGAAAAACTCAGCAAGCAGGACTTCTTC

Heterocephalus glaber genome assembly, chromosome: 8.
OX090916.1:87647530-87647549

GAGTTCAGCAGAGGCAGCTTTTCTCTGCCC87647530TGTTGCATCAGCTGGTACAGTCCAAAGCCCAGCTCCACTAGCCTCTCAGA

Heterocephalus glaber genome assembly, chromosome: 8.
OX090948.1:80418232-80418251

GAGTTCAGCAGAGGCAGCTTTTCTCTGCCC80418232TGTTGCATCAGCTGGTACAGTCCAAAGCCCAGCTCCACTAGCCTCTCAGA

Heterocephalus glaber genome assembly, chromosome: 6.
OZ001071.1:60886436-60886455

GAGTTCAGCAGAGGCAGCTTTTCTCTGCCC60886436TGTTGCATCAGCTGGTACAGTCCAAAGCCCAGCTCCACTAGCCTCTCAGA

Heterocephalus glaber genome assembly, chromosome: 6.
OZ001114.1:60262101-60262120

GAGTTCAGCAGAGGCAGCTTTTCTCTGCCC60262101TGTTGCATCAGCTGGTACAGTCCAAAGCCCAGCTCCACTAGCCTCTCAGA

UCRCS08_39D03_b Parent Washington Navel Orange Callus cDNA Library UCRCS08-2 Citrus sinensis cDNA clone UCRCS08-39D03-H5-1-5.b, mRNA sequence.
CX074432.1:644-663

AGATCCCATTGATGTCCGAACGTTGGGATT644TGTTGCATCAGCTGGTACAGGCAACTCGATTTCAACATTTGTTGCGGTGC

UCRCS10_14F11_b Madame Vinous Sweet Orange Multiple Pathogen-Infected cDNA Library UCRCS10 Citrus sinensis cDNA clone UCRCS10-14F11-K22-6.b, mRNA sequence.
CX672058.1:712-731

AGATCCCATTGATGTCCGAACGTTGGGATT712TGTTGCATCAGCTGGTACAGGCAACTCGATTTCAACATTTGTTGCGGTGC

CP45_H06_057.f1 Citrus paradisi young grapefruit leaf cDNA library Citrus x paradisi cDNA clone CP45_H06_057 3', mRNA sequence.
EB687210.1:634-653

AGATCCCATTGATGTCCGAACGTTGGGATT634TGTTGCATCAGCTGGTACAGGCAACTCGATTTCACAT

Populus trichocarpa clone Pop1-41G18, complete sequence.
AC149575.1:138-157

GATCACTCTAACAGCAGCAACAATGGCTGG138TGTTGCATCAGCTGGTACAGTTGGAGCACCTCTTTTGGCTTTGAAGTTAT

Populus trichocarpa clone ACSB2333-H21, complete sequence.
AC213917.1:12968-12987

GATCACTCTAACGGCAGCAACAATGGCTGG12968TGTTGCATCAGCTGGTACAGTTGGAGCACCTCTTTTGGCTTTGAAGTTAT

Populus trichocarpa clone ACSB2333-H21, complete sequence.
AC213917.1:32054-32073

GATCACTCTAACAGCAGCAACAATGGCTGG32054TGTTGCATCAGCTGGTACAGTTGGAGCACCTCTTTTGGCTTTGAAGTTAT

Acomys dimidiatus genome assembly, chromosome: 13.
OU015386.1:40459529-40459548

GAAGAAGTCCTGCTTGCTGAGTTTTTCTGA40459529CTGTACCAGCTGATGCAACAAGTGGCCCATGTGATCCCTGGTGATCTGGC

UCRPT02_43D05_g Poncirus trifoliata Roots with Iron Deficiency - UCRPT02-UCR1 Citrus trifoliata cDNA clone UCRPT02-43D05-G10-1-5.g, mRNA sequence.
CX639811.1:275-294

GCACTGCAACAAATGTTGAAATCGAGTTAC275CTGTACCAGCTGATGCAACAAATCCCACCGTTCGGACATCAATGGGATCT

Populus nigra genome assembly, chromosome: 7.
OX637678.1:21870045-21870064

ATAACTTCAAAGCCAAAAGAGGTGCTCCAA21870045CTGTACCAGCTGATGCAACACCAGCCATTGTTGCTGCTGTTAGAGTGATC

Populus nigra genome assembly, chromosome: 7.
OX637678.1:21891868-21891887

ATAACTTCAAAGCCAAAAGAGGTGCTCCAA21891868CTGTACCAGCTGATGCAACACCAGCCATTGTTGCTGCTGTTAGAGTGATC

Citrus sinensis genome assembly, chromosome: 1.
OY754318.1:14467973-14467992

GCACTGCAACAAATGTTGAAATCGAGTTGC14467973CTGTACCAGCTGATGCAACAAATCCCAACGTTCGGACATCAATGGGATCT

Data Export:

Maximum 100000 results can be retrieved in various formats shown below:

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You can copy-paste the result into spreadsheet softwares (e.g. Excel) or text editors.
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You can open CSV files using spreadsheet softwares (e.g. Excel) or text editors.
BED format: Link | Download
GFF format: Link | Download
JSON format: Link | Download

Debug Info:

0.009 | 0.009 | search_start;
0.218 | 0.209 | search_plus_done; http://172.18.8.135:50400/match?q=TGTTGCATCAGCTGGTACAG&k=0&no_gap=0&offset=0&limit=50
0.293 | 0.075 | search_minus_done; http://172.18.8.135:50400/match?q=CTGTACCAGCTGATGCAACA&k=0&no_gap=0&offset=0&limit=39
0.296 | 0.004 | cgi_end;

GGGenome by @meso_cacase at DBCLS
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