GGGenome Help | Japanese

Database:
 

Max number of mismatches/gaps mismatches : (no more than 25% of the query length)
Search for: both strand plus strand minus strand

2025-04-04 18:09:08, GGGenome : DDBJ release 134.0 (Mar, 2024)

Summary:

Results:

Matches are highlighted with blue background. Mismatches and indels are marked in red.

Heterocephalus glaber genome assembly, chromosome: 12.
OX090920.1:14525232-14525251
GTAATGTAGTAGAAAAGTCTGTTAGCAAAA14525232TGTTTGGTTTCATCTGACTGCCTTCACAAAATACTACCCAGTGGTAGATT
Heterocephalus glaber genome assembly, chromosome: 12.
OX090952.1:14989921-14989940
GTAATGTAGTAGAAAAGTCTGTTAGCAAAA14989921TGTTTGGTTTCATCTGACTGCCTTCACAAAATACTACCCAGTGGTAGATT
Heterocephalus glaber genome assembly, chromosome: 14.
OZ001079.1:15216435-15216454
GTAATGTAGTAGAAAAGTCTGTTAGCAAAA15216435TGTTTGGTTTCATCTGACTGCCTTCACAAAATACTACCCAGTGGTAGATT
Heterocephalus glaber genome assembly, chromosome: 14.
OZ001122.1:15230361-15230380
GTAATGTAGTAGAAAAGTCTGTTAGCAAAA15230361TGTTTGGTTTCATCTGACTGCCTTCACAAAATACTACCCAGTGGTAGATT
Gymnoscopelus microlampas genome assembly, chromosome: 4.
OY732706.1:60438440-60438459
TGCTTTTGACACTAACCACTCTTGTCTGTG60438440TGTTTGGTTTCATCTGACTGACGGTTCTGTCCAGTGGTGGAAAAAGTACA
Papaver somniferum cultivar Roxanne chromosome 4.
CP048216.1:35837860-35837879
TAAATGCTGACATGTCGACCGGGATTCGAC35837860TGTTTGGTTTCATCTGACTGGGCATTTCCTTCTCTTTGTTGATAATTTGT
Brassica napus cultivar Xiang5A chromosome 8.
CP123883.1:10060962-10060981
TTATTTCGTCGTATTCATCTTTTTCCTTTT10060962TGTTTGGTTTCATCTGACTGATTGATTAGAAATGGTGTAGACAGCATTGT
Trichobilharzia szidati genome assembly, chromosome: 3.
OX235273.1:142636366-142636385
TTTACTCATCTATCACGAATAGTAGTCATA142636366TGTTTGGTTTCATCTGACTGAACTCACATATCTTGGTTTAATGAAGGGAG
Gymnoscopelus braueri genome assembly, chromosome: 7.
OY725514.1:11410226-11410245
TCTACTTTTTCCACCACTGGACAGAACCGT11410226CAGTCAGATGAAACCAAACACACAGACAAGAGTGGTTAGTGTCAAAAGCA
Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrH007M24, *** SEQUENCING IN PROGRESS ***, 2 ordered pieces.
AC189560.2:81056-81075
ACAATGCTGTCTACACCATTTCTAATCAAT81056CAGTCAGATGAAACCAAACAAAAAGGAAAAAGATGAATACGACGAAATAA
Brassica napus cultivar Xiang5A chromosome 12.
CP123887.1:37767862-37767881
ACAATGCTGTCTACACCATTTCAAATCAAT37767862CAGTCAGATGAAACCAAACAAAAAGGAAAAAGATGAATACGACGAAAGAA
Brassica napus genome assembly, chromosome: A07.
HG994361.1:19576748-19576767
ACAATGCTGTCTACACCATTTCTAATCAAT19576748CAGTCAGATGAAACCAAACAAAAAGGAAAAAGATGAATACGACGAAATAA
Brassica napus genome assembly, chromosome: C06.
HG994370.1:31329654-31329673
ACAATGCTGTCTACACCATTTCAGATCAAT31329654CAGTCAGATGAAACCAAACAAAAAGGAAAAAGATGAATACGACGAAAGAA
Brassica rapa genome, scaffold: A07.
LR031574.1:18511049-18511068
TGCTGTCTGTCTACACCATTTCAAATCAGT18511049CAGTCAGATGAAACCAAACAAAAAGGAAAAAGATGAATACGACGAAAGAA
Brassica oleracea HDEM genome, scaffold: C6.
LR031880.1:28224692-28224711
ACAATGCTGTCTACACCATTTCAGATCAAT28224692CAGTCAGATGAAACCAAACAAAAAGGAAAAAGATGAATACGACGAAAGAA
Brassica rapa genome assembly, chromosome: A07.
LS974623.2:18802444-18802463
TGCTGTCTGTCTACACCATTTCAAATCAGT18802444CAGTCAGATGAAACCAAACAAAAAGGAAAAAGATGAATACGACGAAAGAA

Data Export:

Maximum 100000 results can be retrieved in various formats shown below:

Debug Info:

Redirect URI : https://gggenome.dbcls.jp/en/ddbj/TGTTTGGTTTCATCTGACTG
lang : en | db : ddbj | k : 0 | strand : | nogap : | query_string : TGTTTGGTTTCATCTGACTG | format : html | download : | debug : 

0.009 | 0.009 | search_start;
0.374 | 0.365 | search_plus_done; http://172.18.8.135:50400/match?q=TGTTTGGTTTCATCTGACTG&k=0&no_gap=0&offset=0&limit=50
0.506 | 0.131 | search_minus_done; http://172.18.8.135:50400/match?q=CAGTCAGATGAAACCAAACA&k=0&no_gap=0&offset=0&limit=42
0.511 | 0.005 | cgi_end;

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